1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attaattcagttccacacgtttgtgttactctattttatattgacctaattgttccataccctcatctgcacaaatcctgatgtctgttgtacgctgcagGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGACACCATCTGCAAGATCGATACTTACAGAACTGAAAG
species | Oryza sativa |
transcript | LOC_Os03g05720.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAG GTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCEST: gi|29634108|gb|CB639117.1|CB639117
genomic: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGgtaaaatgct ... tacgctgcagGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGC
EST: CACTTAAGATCATGTTTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAG GTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCEST: gi|7332525|gb|AU085871.1|AU085871
genomic: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGgtaaaatgct ... tacgctgcagGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGC
EST: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAG GTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCEST: gi|218485889|gb|FG950181.1|FG950181
genomic: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGgtaaaatgct ... tacgctgcagGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGC
EST: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAG GTTGAGCTTGTNTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCEST: gi|218478499|gb|FG957068.1|FG957068
genomic: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGgtaaaatgct ... tacgctgcagGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGC
EST: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAG GTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCEST: gi|33803449|gb|CF327599.1|CF327599
genomic: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGgtaaaatgct ... tacgctgcagGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGC
EST: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAG GTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCEST: gi|218482633|gb|FG949654.1|FG949654
genomic: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGgtaaaatgct ... tacgctgcagGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGC
EST: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAG GTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGC
genomic: CACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGgtaaaatgct ... tacgctgcagGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGC
ctaattgttccataccctcatctgcacaaatcctgatgtctgttgtacgctgcagGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGACACCATCTGCAAGATCGATACTTACAGAACTGAAAG
tcctgat putative branch site (score: 31)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaattcagttccacacgtttgtgttactctattttatattgacctaattgttccataccctcatctgcacaaatcctgatgtctgttgtacgctgcagGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGACACCATCTGCAAGATCGATACTTACAGAACTGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - -tccacac
- - - - - - - - - - ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttg