1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cacccttattagtatctacaccttcctgtgaaaagaaatgtggttgtgtttgatgcacagtaattctaggaccctgtctgaatccatgttctctttccagGAAGTGTTGTGAAGTAAAAAAAGGTTCGATGATGTTTGGCTGGCAGTTCAAAGGAATAGCATATGTTTCGACATTTCTTCCCAGAGGACAGCACTGGGTA
species | Oryza sativa |
transcript | LOC_Os03g04140.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATTTTGAGCATGTTGCCGTTAGTTTTTCAGATGACAAAGCTAATG GAAGTGTTGTGAAGTNNNNNNNGGTTCGATGATGTTTGGCTGGCAGTTCAAEST: gi|86896186|gb|CI330116.1|CI330116
genomic: TATTTTGAGCATGTTGCCGTTAGTTTTTCAGATGACAAAGCTAATGgttagttttc ... ctctttccagGAAGTGTTGTGAAGTAAAAAAAGGTTCGATGATGTTTGGCTGGCAGTTCAA
EST: AGATTATTTTGAGCATGTTGCCGTTAGTTTTTCAGATGACAAAGCTAATG GAAGTGTTGTGAAGTNNNNNNNGGTTCGATGATGTTTGGCTGGCAGTTCAAEST: gi|86492726|gb|CI135359.1|CI135359
genomic: AGATTATTTTGAGCATGTTGCCGTTAGTTTTTCAGATGACAAAGCTAATGgttagttttc ... ctctttccagGAAGTGTTGTGAAGTAAAAAAAGGTTCGATGATGTTTGGCTGGCAGTTCAA
EST: AGATTATTTTGAGCATGTTGCCGTTAGTTTTTCAGATGACAAAGCTAATG GAAGTGTTGTGAAGTNNNNNNNGGTTCGATGATGTTTGGCTGGCAGTTCAAEST: gi|38480201|gb|CF964290.1|CF964290
genomic: AGATTATTTTGAGCATGTTGCCGTTAGTTTTTCAGATGACAAAGCTAATGgttagttttc ... ctctttccagGAAGTGTTGTGAAGTAAAAAAAGGTTCGATGATGTTTGGCTGGCAGTTCAA
EST: AGATTATTTTGAGCATGTTGCCGTTAGTTTTTCAGATGACAAAGCTAATG GAAGTGTCGTGAAGTNNNNNNNGGTTCGATGATGTCTGGCTGGCAGTTCAA
genomic: AGATTATTTTGAGCATGTTGCCGTTAGTTTTTCAGATGACAAAGCTAATGgttagttttc ... ctctttccagGAAGTGTTGTGAAGTAAAAAAAGGTTCGATGATGTTTGGCTGGCAGTTCAA
gtgtttgatgcacagtaattctaggaccctgtctgaatccatgttctctttccagGAAGTGTTGTGAAGTAAAAAAAGGTTCGATGATGTTTGGCTGGCAGTTCAAAGGAATAGCATATGTTTCGACATTTCTTCCCAGAGGACAGCACTGGGTA
gtttgat putative branch site (score: 22)
tccatgttctctttcc putative PPT
taattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacccttattagtatctacaccttcctgtgaaaagaaatgtggttgtgtttgatgcacagtaattctaggaccctgtctgaatccatgttctctttccagGAAGTGTTGTGAAGTAAAAAAAGGTTCGATGATGTTTGGCTGGCAGTTCAAAGGAATAGCATATGTTTCGACATTTCTTCCCAGAGGACAGCACTGGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - ccttcct
- - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - -ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atccatg