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gtttgcatcgcactggttttagaaggaagcttagttgcaatcttactgatttttttcgtcattatcagtcccacacctcttgaatttactagtgcatataatagGTAAATGGTGGAGAATGGAAAACCATTCGTAAAGTCACTGCACTATGCATAGGAAATGCCAAATACTTCGGCGGTGGTATGAAGATCACTCCAACAGCTG
species | Oryza sativa |
transcript | LOC_Os03g03400.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGCGCTCAGAGCCTTTTGGGGACATAGTAATCGAGATCTTAGAATAAAG GTAAATGGTGGAGAATGGAAAACCATTCGTAAAGTCACTGCACTATGCATAEST: gi|58682220|gb|CK070907.1|CK070907
genomic: GAGCGCTCAGAGCCTTTTGGGGACATAGTAATCGAGATCTTAGAATAAAGgtttgcatcg ... catataatagGTAAATGGTGGAGAATGGAAAACCATTCGTAAAGTCACTGCACTATGCATA
EST: GAGCGCTCAGAGCCTTTTGGGGACATAGTAATCGAGATCTTAGAATAAAG GTAAATGGTGGAGAATGGAAAACCATTCGTAAAGTCACTGGACTATGCATAEST: gi|29641406|gb|CB646413.1|CB646413
genomic: GAGCGCTCAGAGCCTTTTGGGGACATAGTAATCGAGATCTTAGAATAAAGgtttgcatcg ... catataatagGTAAATGGTGGAGAATGGAAAACCATTCGTAAAGTCACTGCACTATGCATA
EST: GAGCGCTCAGAGCCTTTTGGGGACATAGTAATCGAGATCTTAGAATAAAG GTAAATGGTGGAGAATGGAAAACCATTCGTAAAGTCACTGCACTATGCATAEST: gi|29641179|gb|CB646186.1|CB646186
genomic: GAGCGCTCAGAGCCTTTTGGGGACATAGTAATCGAGATCTTAGAATAAAGgtttgcatcg ... catataatagGTAAATGGTGGAGAATGGAAAACCATTCGTAAAGTCACTGCACTATGCATA
EST: GAGCGCTCAGAGCCTTTTGGGGACATAGTAATCGAGATCTTAGAATAAAG GTAAATGGTGGAGAATGGAAAACCATTCGTAAAGTCACTGCACTATGCATA
genomic: GAGCGCTCAGAGCCTTTTGGGGACATAGTAATCGAGATCTTAGAATAAAGgtttgcatcg ... catataatagGTAAATGGTGGAGAATGGAAAACCATTCGTAAAGTCACTGCACTATGCATA
tttttttcgtcattatcagtcccacacctcttgaatttactagtgcatataatagGTAAATGGTGGAGAATGGAAAACCATTCGTAAAGTCACTGCACTATGCATAGGAAATGCCAAATACTTCGGCGGTGGTATGAAGATCACTCCAACAGCTG
atataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcatcgcactggttttagaaggaagcttagttgcaatcttactgatttttttcgtcattatcagtcccacacctcttgaatttactagtgcatataatagGTAAATGGTGGAGAATGGAAAACCATTCGTAAAGTCACTGCACTATGCATAGGAAATGCCAAATACTTCGGCGGTGGTATGAAGATCACTCCAACAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG