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gtaactggcgccaaactttctgttgtgcagatgatataatgcattttcactgaagaaaaattctatcttttgcagAACTTGATTTATGGTCTGGAGAAGTTCTTGTAGGATTTTATTAGAATGCTGGTAGGAATTTTCATCCCACATATCAAGAGAAATACAAGCTATGGATATT
species | Oryza sativa |
transcript | LOC_Os03g02690.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCCTAATGCCAGGATTAATTCTGGCAATACGGAAGGTGATACGCTTGAAG AACTTGATTTATGGTEST: gi|29684782|gb|CB681057.1|CB681057
genomic: GCCTAATGCCAGGATTAATTCTGGCAATACGGAAGGTGATACGCTTGAAGgtaactggcg ... tcttttgcagAACTTGATTTATGGT
EST: GCCTAATGCCAGGATTAATTCTGGCAATACGGAAGGTGATACGCTTGAAG AACTTGATTTATGGTCTGGAGAAGTTCTTGTAGGATTTTATTAGAATGCTG
genomic: GCCTAATGCCAGGATTAATTCTGGCAATACGGAAGGTGATACGCTTGAAGgtaactggcg ... tcttttgcagAACTTGATTTATGGTCTGGAGAAGTTCTTGTAGGATTTTATTAGAATGCTG
tgttgtgcagatgatataatgcattttcactgaagaaaaattctatcttttgcagAACTTGATTTATGGTCTGGAGAAGTTCTTGTAGGATTTTATTAGAATGCTGGTAGGAATTTTCATCCCACATATCAAGAGAAATACAAGCTATGGATATT
ttctatctttt CT-rich tract
aaaaattctatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactggcgccaaactttctgttgtgcagatgatataatgcattttcactgaagaaaaattctatcttttgcagAACTTGATTTATGGTCTGGAGAAGTTCTTGTAGGATTTTATTAGAATGCTGGTAGGAATTTTCATCCCACATATCAAGAGAAATACAAGCTATGGATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT