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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtactttgcaacagtaatactgtttgattctatatatgtttttttggtactttggtaatgtttcgttcacattcctgatagtctataaatgcttcattcgcattaaatccccgtgagtgaaaactttgccataatgtgatggtatttcatctgtcttcacagGAAAACATGTCTAGGATGCTGTTAGTAACAGATGTACAGGATATCATTAAAAGGCACCAGGCCCAGATTATTACCTCTTTGAAAGATCCAGATATCAG

Basic information

species Oryza sativa
transcript LOC_Os03g02150.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02150.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G700148_T01 (Zea mays), 3'ss of exon 9
gtaagttgtactttgcaacagtaatactgtttgattctatatatgtttttttggtactttggtaatgtttcgttcacattcctgatagtctataaatgcttcattcgcattaaatccccgtgagtgaaaactttgccataatgtgatggtatttcatctgtcttcacagGAAAACATGTCTAGGATGCTGTTAGTAACAGATGTACAGGATATCATTAAAAGGCACCAGGCCCAGATTATTACCTCTTTGAAAGATCCAGATATCAG
                                   |   |  || | || ||  || ||   |||||  |        || |||  |||||     ||||||   ||||| || |    |  |||| ||| | | ||||| || ||  ||| |  |||  ||||  |||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||
----------------------------------gtaattgcatttcttattaatatttacttaatgcctt-------ttgctggcagtct-----tgcttc---cgcatcaagttgt-gcaagtgtaaaatctaccatattgagacagtaatcgatccatcttt-cagGAAAACATGACTAGGATGCTGTTAGTAACAGATGTGCAGGATATCATTAGAAGGCACCAGGCCCAGATCATTACATCTTTGAAGGATCCAGATATCAG

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G137236_T01 (Zea mays), 3'ss of exon 10
gtaagttgtactttgcaacagtaatactgtttgattctatatatgtttttttggtactttggtaatgtttcgttcacattcctgatagtctataaatgcttcattcgcattaaatccccgtgagtgaaaactttgccataatgtgatggtatttcatctgtcttcacagGAAAACATGTCTAGGATGCTGTTAGTAACAGATGTACAGGATATCATTAAAAGGCACCAGGCCCAGATTATTACCTCTTTGAAAGATCCAGATATCAG
                                              |  ||   |   ||  ||||||||  || |    |    |   ||   | |  | | ||| ||| || |    |  |||| | | |||  |||| ||  |  ||| |  |||  ||||  |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || || |||||||| ||||||||||||||
---------------------------------------------gtaattgcatttcttattaatgtttacttgattaacaccttttgctggcagtcttgctttcacatcaagttgt-gcaagtgtacaatttatcatattgaaacagtaatcgatccatcttt-cagGAAAACATGACTAGGATGCTGTTAGTAACAGATGTGCAGGATATCATTAAAAGGCACCAGGCTCAGATCATCACATCTTTGAAGGATCCAGATATCAG

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 9
gtaagttgtactttgcaacagtaatactgtttgattctatatatgtttttttggtactttggtaatgtttcgttcacattcctgatagtctataaatgcttcattcgcattaaatccccgtgagtgaaaactt--tgccataatgtgatggtatttcatctgtctt--cacagGAAAACATGTCTAGGATGCTGTTAGTAACAGATGTACAGGATATCATTAAAAGGCACCAGGCCCAGATTATTACCTCTTTGAAAGATCCAGATATCAG
                                                                   |||| ||   ||     ||||| ||  || ||||  |     ||        |   || | ||     || |  | | | ||   || |   || |       ||||| || ||| | || ||| || | || || |||||||| |||||||| ||||| || || || |||||||||||||| ||||| ||||| || |||||
------------------------------------------------------------------atttcatt-gtatc----atagttta-gaaggcttggtggtggttgtggttgtggttgtcataatgcaatgtctcagt-tcataacatatatgctattgcggtgcagGAGAATATGACAAGAATGTTGATGGTTACTGATGTACAAGATATCATAAAAAGACATCAAGCTCAGATTATTACCTCATTGAAGGATCCTGACATCAG

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA17G05410.1 (Glycine max), 3'ss of exon 9
-------gtaagttgtactttgcaacagtaatactgtttgattctatatatgtttttttggtactttggtaatgtttcgttcacattcctgatagtctataa-atgcttcattcgcatt----aaatccccgtgagtgaaaactttgccataatgtgatg---------gtatttcatctgtcttca-----cagGAAAACATGTCTAGGATGCTGTTAGTAACAGATGTACAGGATATCATTAAAAGGCACCAGGCCCAGATTATTACCTCTTTGAAAGATCCAGATATCAG
       |   |   |||||    | |   ||| |  |   ||||   | | || |||  ||     ||         | |  ||| ||  ||  |||  |  |   ||||||  |||     ||  |   |||   |      ||| |||||||  |||          ||    || ||   | |     ||||| || ||| | || ||| || | || || |||||||| |||||||||||||| || || || |||||||||||||| ||||| ||||| || |||||
gtaagtcggggggcatacttgatta-atccatatttctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatt-tctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcagGAGAATATGACAAGAATGTTGATGGTTACTGATGTACAAGATATCATTAAAAGACATCAAGCTCAGATTATTACCTCATTGAAGGATCCTGACATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccccgtgagtgaaaactttgccataatgtgatggtatttcatctgtcttcacagGAAAACATGTCTAGGATGCTGTTAGTAACAGATGTACAGGATATCATTAAAAGGCACCAGGCCCAGATTATTACCTCTTTGAAAGATCCAGATATCAG
                                     tttcatctgtcttc  CT-rich tract
            aaaacttt  TA-rich tract