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...tttcttcaaggcatgataattactggaaatagaatttgatgtgtatttatgttaatgtttcgattaactgaagtttgcataaccttcctatgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCT
species | Oryza sativa |
transcript | LOC_Os03g01150.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT GATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATEST: gi|66916126|gb|CX102974.1|CX102974
genomic: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttt ... tgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAAT
EST: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT GATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATEST: gi|29661631|gb|CB657906.1|CB657906
genomic: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttt ... tgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAAT
EST: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT GATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATEST: gi|29619263|gb|CB624275.1|CB624275
genomic: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttt ... tgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAAT
EST: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT GATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATEST: gi|29661632|gb|CB657907.1|CB657907
genomic: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttt ... tgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAAT
EST: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT GATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATEST: gi|58585728|gb|CF984036.1|CF984036
genomic: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttt ... tgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAAT
EST: GCGCGTCTTGCACCTAGTGGTTACATGAAAATCCCAACT GATATTTCAGATTATTTAAAGGGTTGTAGATTTNCTTCCAAAGCTTAACAAEST: gi|58678057|gb|CK066744.1|CK066744
genomic: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttt ... tgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTT-CTTCCAAAGCTTAACAA
EST: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT GATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCEST: gi|25797306|gb|CA753267.1|CA753267
genomic: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttt ... tgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCC
EST: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT GATATTTCAGATTATTTAAAGGGTTGTACATTTCTTCCAAAGCTTAACAATEST: gi|117235882|gb|CT847837.1|CT847837
genomic: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttt ... tgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAAT
EST: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT GATATTTCCGAATTATTTAAAGGGTTGGAGATTTCCTTCAAAAGCTTAAC
genomic: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttt ... tgcttttcagGATATTTCAGA-TTATTTAAAGGGTTGTAGATTTC-TTCCAAAGCTTAAC
tttatgttaatgtttcgattaactgaagtttgcataaccttcctatgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCT
ccttcctatgcttttc CT-rich tract
ttaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttcaaggcatgataattactggaaatagaatttgatgtgtatttatgttaatgtttcgattaactgaagtttgcataaccttcctatgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - -ggcatga
- - - - - - - - - - - - - aaatagaa
- - - - - - - - - - - - - - - - - -ttgatgt
- - - - - - - - - - - - - - - - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcata