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gtaagcagttgttttcttttcttcagcaaactatatgttaatgttctgcagctattgaccactgagttacctttttcagGTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGCCCTGTTGCTTATTTCTACTTCGATCCATATTCAAGACCATCTGAGAAGC
species | Oryza sativa |
transcript | LOC_Os02g58340.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAAATAGGCTCTTTGGTGTTAGCGTAGAGCCTGCAGATGGACTGGCTCCT GTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGCEST: gi|58676094|gb|CK064781.1|CK064781
genomic: CAAATAGGCTCTTTGGTGTTAGCGTAGAGCCTGCAGATGGACTGGCTCCTgtaagcagtt ... cctttttcagGTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGC
EST: GCGTAGAGCCTGCAGATGGACTGGCTCCT GTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGCEST: gi|88375308|gb|CI681071.1|CI681071
genomic: GCGTAGAGCCTGCAGATGGACTGGCTCCTgtaagcagtt ... cctttttcagGTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGC
EST: CAAATAGGCTCTTTGGTGTTAGCGTAGAGCCTGCAGATGGACTGGCTCCT GTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGCEST: gi|27577497|gb|CB000192.1|CB000192
genomic: CAAATAGGCTCTTTGGTGTTAGCGTAGAGCCTGCAGATGGACTGGCTCCTgtaagcagtt ... cctttttcagGTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGC
EST: CAAATAGGCTCTTTGGTGTTAGCGTAGAGCCTGCAGATGGACTGGCTCCT GTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGCEST: gi|87011355|gb|CI289625.1|CI289625
genomic: CAAATAGGCTCTTTGGTGTTAGCGTAGAGCCTGCAGATGGACTGGCTCCTgtaagcagtt ... cctttttcagGTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGC
EST: TGGTGTTAGCGTAGAGCCTGCAGATGGACTGGCTCCT GTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGC
genomic: TGGTGTTAGCGTAGAGCCTGCAGATGGACTGGCTCCTgtaagcagtt ... cctttttcagGTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGC
agcaaactatatgttaatgttctgcagctattgaccactgagttacctttttcagGTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGCCCTGTTGCTTATTTCTACTTCGATCCATATTCAAGACCATCTGAGAAGC
tattgac putative branch site (score: 50)
ttacctttttc putative PPT
tatatgttaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcagttgttttcttttcttcagcaaactatatgttaatgttctgcagctattgaccactgagttacctttttcagGTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGCCCTGTTGCTTATTTCTACTTCGATCCATATTCAAGACCATCTGAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC