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gtgactttgcttgctcacatcccccatcactccattgaatttctgcaaatccaaatattacctttgctattgtttcacttaagagtcgtccagtgataactttagtctgtgccttaatatttatttatctgtattcactaagGCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGA
species | Oryza sativa |
transcript | LOC_Os02g58020.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAG GCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGAEST: gi|29662747|gb|CB659022.1|CB659022
genomic: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAGgtgactttgc ... attcactaagGCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGA
EST: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAG GCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGAEST: gi|3766930|gb|AU031040.1|AU031040
genomic: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAGgtgactttgc ... attcactaagGCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGA
EST: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAG GCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGAEST: gi|24468674|gb|CA305623.1|CA305623
genomic: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAGgtgactttgc ... attcactaagGCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGA
EST: GTTCCGTTACAATGCAAAGAGAGCATCACTTTGTTCAATCAAGAATCAAG GCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGAEST: gi|218495876|gb|FG947058.1|FG947058
genomic: GTTCCGTTACAATGCAAAGAGAGCATCACTT-GTTCAATCAAGAATCAAGgtgactttgc ... attcactaagGCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGA
EST: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAG GCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGAEST: gi|218483226|gb|FG956166.1|FG956166
genomic: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAGgtgactttgc ... attcactaagGCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGA
EST: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAG GCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGAEST: gi|86909957|gb|CI292894.1|CI292894
genomic: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAGgtgactttgc ... attcactaagGCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGA
EST: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAG GCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGAEST: gi|58602069|gb|CK012597.1|CK012597
genomic: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAGgtgactttgc ... attcactaagGCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGA
EST: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAG GCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGACTA
genomic: AGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAGgtgactttgc ... attcactaagGCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGACTA
gtccagtgataactttagtctgtgccttaatatttatttatctgtattcactaagGCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGA
ttaatatttatttatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgactttgcttgctcacatcccccatcactccattgaatttctgcaaatccaaatattacctttgctattgtttcacttaagagtcgtccagtgataactttagtctgtgccttaatatttatttatctgtattcactaagGCATTGGAGCGAATGGAGCATGTTGATGCGGTCGTCAGTGATCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA