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...caatcttaagagagaggattttcccgcatgatttatctgatgatatcttaagagagagagagaattctaaacatttgatgtaagctgatgcttggtgcagGTTAGGATCCATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTGATAGACAATTTTCTAGTGTAGCTAAATTTCGATGAATTATTGATAAATA
species | Oryza sativa |
transcript | LOC_Os02g54580.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGCCCACCACAATATCCAG GGTAGGATCCATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTGEST: gi|88503366|gb|CI430872.1|CI430872
genomic: ATGCCCACCACAATATCCAGgtatcttctg ... cttggtgcagGTTAGGATCCATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTG
EST: TATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAG GTTAGGATCCATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTGEST: gi|58652918|gb|CK041598.1|CK041598
genomic: TATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAGgtatcttctg ... cttggtgcagGTTAGGATCCATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTG
EST: TATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAG GTTAGGATCCATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTGEST: gi|29629784|gb|CB634793.1|CB634793
genomic: TATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAGgtatcttctg ... cttggtgcagGTTAGGATCCATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTG
EST: TATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAG GTTAGGATCCATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTG
genomic: TATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAGgtatcttctg ... cttggtgcagGTTAGGATCCATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTG
tcttaagagagagagagaattctaaacatttgatgtaagctgatgcttggtgcagGTTAGGATCCATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTGATAGACAATTTTCTAGTGTAGCTAAATTTCGATGAATTATTGATAAATA
aattctaaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatcttaagagagaggattttcccgcatgatttatctgatgatatcttaagagagagagagaattctaaacatttgatgtaagctgatgcttggtgcagGTTAGGATCCATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTGATAGACAATTTTCTAGTGTAGCTAAATTTCGATGAATTATTGATAAATA
- - - -aagagaga
- - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - ctgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatg