1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgccaatatcctattgcaagttctatattattgtctttgcatcattttgttgtttatttagagtaaccattcttcggtttttttatttgcgatgcttaggttaccctgtttaaagctgatagttacttttttgtgtgtgtgttctcaccgactccagAACTCAGTTTGCTCCATTGCTTGGTGGTTATGGTTCCAGTTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAG
species | Oryza sativa |
transcript | LOC_Os02g54000.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTGAATATGTAGAGATCCAGAATTTAACCGAGTTTTACGATGATAACAG AACTCAGTTTGCTCCATTGCTTGGTGGTTATGGTTCCAGTTTGGTGGATCCEST: gi|88228791|gb|CI228271.1|CI228271
genomic: CTTGAATATGTAGAGATCCAGAATTTAACCGAGTTTTACGATGATAACAGgtgccaatat ... ccgactccagAACTCAGTTTGCTCCATTGCTTGGTGGTTATGGTTCCAGTTTGGTGGATCC
EST: CAGAATTTAACCGAGTTTTACGATGATAACAG AACTCAGTTTGCTCCATTGCTTGGTGGTTATGGTTCCAGTTTGGTGGATCC
genomic: CAGAATTTAACCGAGTTTTACGATGATAACAGgtgccaatat ... ccgactccagAACTCAGTTTGCTCCATTGCTTGGTGGTTATGGTTCCAGTTTGGTGGATCC
accctgtttaaagctgatagttacttttttgtgtgtgtgttctcaccgactccagAACTCAGTTTGCTCCATTGCTTGGTGGTTATGGTTCCAGTTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAG
ttctcac putative branch site (score: 4)
ttctcacc CT-rich tract
atagttactttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccaatatcctattgcaagttctatattattgtctttgcatcattttgttgtttatttagagtaaccattcttcggtttttttatttgcgatgcttaggttaccctgtttaaagctgatagttacttttttgtgtgtgtgttctcaccgactccagAACTCAGTTTGCTCCATTGCTTGGTGGTTATGGTTCCAGTTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA