1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaattctggtgaaatggttatcattgtttgtttattgctgtgaatttatgatgcattttcagatgcactaacgtcaacactataatttgtatccttgcagCTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGACATTGTCTTCCCATTGGATGAGGAGCTTGAAGGGCCAGCATGTAGTGTTG
species | Oryza sativa |
transcript | LOC_Os02g51830.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGACATACCAGCTTGCGGCTTTGGATTTGGAGACGCTGTTATAGTGGAA CTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGACEST: gi|25807598|gb|CA763559.1|CA763559
genomic: AAGACATACCAGCTTGCGGCTTTGGATTTGGAGACGCTGTTATAGTGGAAgtatgtcttc ... atccttgcagCTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGAC
EST: TTGGAGACGCTGTTATAGTGGAA CTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGACEST: gi|27548061|gb|CA767487.2|CA767487
genomic: TTGGAGACGCTGTTATAGTGGAAgtatgtcttc ... atccttgcagCTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGAC
EST: GGATTTGGAGACGCTGTTATAGTGGAA CTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGACEST: gi|89185656|gb|CI047525.1|CI047525
genomic: GGATTTGGAGACGCTGTTATAGTGGAAgtatgtcttc ... atccttgcagCTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGAC
EST: AAGACATACCAGCTTGCGGCTTTGGATTTGGAGACGCTGTTATAGTGGAA CTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGACEST: gi|8404516|gb|AU091870.1|AU091870
genomic: AAGACATACCAGCTTGCGGCTTTGGATTTGGAGACGCTGTTATAGTGGAAgtatgtcttc ... atccttgcagCTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGAC
EST: AAGACATACCAGCTTGCGGCTTTGGATTTGGAGACGCTGTTATAGTGGAA CTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGAC
genomic: AAGACATACCAGCTTGCGGCTTTGGATTTGGAGACGCTGTTATAGTGGAAgtatgtcttc ... atccttgcagCTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGAC
ttatgatgcattttcagatgcactaacgtcaacactataatttgtatccttgcagCTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGACATTGTCTTCCCATTGGATGAGGAGCTTGAAGGGCCAGCATGTAGTGTTG
cactaac putative branch site (score: 7)
tatcctt putative PPT
actataatttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattctggtgaaatggttatcattgtttgtttattgctgtgaatttatgatgcattttcagatgcactaacgtcaacactataatttgtatccttgcagCTGCTGAAAGAAAAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGACATTGTCTTCCCATTGGATGAGGAGCTTGAAGGGCCAGCATGTAGTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - -ctggtga
- - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - ttgctgt
- - - - - - - - - - - - - - - - - - - - - - - tatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcac