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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggtgtaagcttcaggcagttttacaatacgaatttagacaacagattacacttgaatacttgttaaaaacatgttgctttgaatgcagTGCTTTTTTCCTCAGAATGAGGTGAAACAGATTCAGACACCTTTGTTCATTCTCAACGCAGCGTATGATTCCTGGCAG

Basic information

species Oryza sativa
transcript LOC_Os02g47400.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47400.2 (Oryza sativa), 3'ss of exon 9
lower sequence: AC204604.3_FGT008 (Zea mays), 3'ss of exon 1
gtaaggtgtaagcttcaggcagttttacaatacgaatttagacaacagattacacttgaatacttgttaaaaacatgttgctttgaatgcagTGCTTTTTTCCTCAGAATGAGGTGAAACAGATTCAGACACCTTTGTTCATTCTCAACGCAGCGTATGATTCCTGGCAG
||||| | |||  | || |||| || | ||| |   | ||| ||    |   || || |     |   ||  |||| |||| ||| |||||||||||||| || ||||| |||||||||||||| ||||||||| ||||||| ||||||||||| |||||||| ||||||
gtaagatataaattgcaagcagcttcataatgcatctgtagccag-gcaacgcatttcacgcactcaaaagtacatcttgcgttggatgcagTGCTTTTTCCCCCAGAACGAGGTGAAACAGATACAGACACCTCTGTTCATCCTCAACGCAGCATATGATTCATGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58684177|gb|CK072864.1|CK072864
EST:     CAGCGAAGAATTTACCTTCTGCTTGCACCTCCAGATTGTCCCCAGGCATG                         TGCTTTTTTCCTCAGAATGAGGTGAAACAGATTCAGACACCTTTGTTCATT
genomic: CAGCGAAGAATTTACCTTCTGCTTGCACCTCCAGATTGTCCCCAGGCATGgtaaggtgta ... ttgaatgcagTGCTTTTTTCCTCAGAATGAGGTGAAACAGATTCAGACACCTTTGTTCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagacaacagattacacttgaatacttgttaaaaacatgttgctttgaatgcagTGCTTTTTTCCTCAGAATGAGGTGAAACAGATTCAGACACCTTTGTTCATTCTCAACGCAGCGTATGATTCCTGGCAG
                                        ttgcttt  CT-rich tract
                     aatacttgttaaaaa  TA-rich tract