Sequence
atgc intronic sequence ATGC exonic sequencegtaaggtgtaagcttcaggcagttttacaatacgaatttagacaacagattacacttgaatacttgttaaaaacatgttgctttgaatgcagTGCTTTTTTCCTCAGAATGAGGTGAAACAGATTCAGACACCTTTGTTCATTCTCAACGCAGCGTATGATTCCTGGCAG
Basic information
species | Oryza sativa |
transcript | LOC_Os02g47400.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g47400.2 (Oryza sativa), 3'ss of exon 9
lower sequence: AC204604.3_FGT008 (Zea mays), 3'ss of exon 1
gtaaggtgtaagcttcaggcagttttacaatacgaatttagacaacagattacacttgaatacttgttaaaaacatgttgctttgaatgcagTGCTTTTTTCCTCAGAATGAGGTGAAACAGATTCAGACACCTTTGTTCATTCTCAACGCAGCGTATGATTCCTGGCAG
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gtaagatataaattgcaagcagcttcataatgcatctgtagccag-gcaacgcatttcacgcactcaaaagtacatcttgcgttggatgcagTGCTTTTTCCCCCAGAACGAGGTGAAACAGATACAGACACCTCTGTTCATCCTCAACGCAGCATATGATTCATGGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58684177|gb|CK072864.1|CK072864EST: CAGCGAAGAATTTACCTTCTGCTTGCACCTCCAGATTGTCCCCAGGCATG TGCTTTTTTCCTCAGAATGAGGTGAAACAGATTCAGACACCTTTGTTCATT
genomic: CAGCGAAGAATTTACCTTCTGCTTGCACCTCCAGATTGTCCCCAGGCATGgtaaggtgta ... ttgaatgcagTGCTTTTTTCCTCAGAATGAGGTGAAACAGATTCAGACACCTTTGTTCATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagacaacagattacacttgaatacttgttaaaaacatgttgctttgaatgcagTGCTTTTTTCCTCAGAATGAGGTGAAACAGATTCAGACACCTTTGTTCATTCTCAACGCAGCGTATGATTCCTGGCAG
ttgcttt CT-rich tract
aatacttgttaaaaa TA-rich tract