1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctcttttttgttccttttaaatattttgtatggattggcagtaggaataaatcattgatctgttatgagccagatgttgacacaatgctttgttttttagATTGCTGCAGTGTTTAAGATAGGAAACAGTAAGGAGCTTCCACCAATACCAGATCACCTCTCAGAAGAGGGCAGAGACTTTATAAGACAGTGCCTGCAGC
species | Oryza sativa |
transcript | LOC_Os02g44642.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
aataaatcattgatctgttatgagccagatgttgacacaatgctttgttttttagATTGCTGCAGTGTTTAAGATAGGAAACAGTAAGGAGCTTCCACCAATACCAGATCACCTCTCAGAAGAGGGCAGAGACTTTATAAGACAGTGCCTGCAGC
tgttgac putative branch site (score: 7)
ctttgtttttt putative PPT
tttgtttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttttttgttccttttaaatattttgtatggattggcagtaggaataaatcattgatctgttatgagccagatgttgacacaatgctttgttttttagATTGCTGCAGTGTTTAAGATAGGAAACAGTAAGGAGCTTCCACCAATACCAGATCACCTCTCAGAAGAGGGCAGAGACTTTATAAGACAGTGCCTGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - -ttgtatg
- - - - - - - - - - - - - - - - - - -gcagtag
- - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctt