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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcatacagacttgatcaagctgttttttactgccacgtatatgcaatgcaacttctgtcttgtgaacatgccataacaagttactgacaagttactttctgtacaaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAATTGTCTGTTGACATTTGATAGTTTACTGTTCTAAGTGACACTCTTGAGCC

Basic information

species Oryza sativa
transcript LOC_Os02g42320.3
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 11
gtatgtcatacagacttgatcaagctgttttttactgccacgta-tatgcaatgcaacttctgtcttgtgaacatgccataacaagttactgacaagttac----tttctgtacaaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAATTGTCTGTTGACATTTGATAGTTTA--CTGTTCTA--AGTGACACTCTTGAGCC
| ||||||| || | ||||| || || |||| | || || |||| || | || |||| |||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| | ||||| | | || || | |||| |||
--------------------tttgttgtttttgcaaacctggagctatgcgatattacaaagtccttgc---tacattcaaatggtttgctgagaactaacagtttttccatacaaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCTGTCTGTTGATGAT-ACTAGTTCAGACAACAATAGCAGCGTCACTTATGA---

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G115948_T01 (Zea mays), 3'ss of exon 7
gtatgtcatacagacttgatcaagctgttttttactgccacgta-tatgcaatgcaacttctgtcttgtgaacatgccataacaagttactgacaagttac----tttctgtacaaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAATTGTCTGTTGAC---ATTTGATAGTTTACTGTTCTAAGTGACACTCTTGAGCC
| ||||||| || | ||||| || | |||| | || || |||| || | || |||| |||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| | | | | | | | |||| |||| |||
--------------------tttgttgtttttgcaaacctggagctatgcgatattagaaagtccttgc---tacattcaaatggtttgctgagaactaacagtttttccatacaaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCTGTCTGTTGATGATACTAGTTCGGACAACAATAGCAGTGTCACTTATGA---

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM5G850355_T02 (Zea mays), 3'ss of exon 11
gtatgtcatacagacttgatcaagctgttttttactgccacgtatatgcaatgcaacttctgtcttgtgaacatgccataacaagttactgacaagttac--tttctgtacaaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAATTGTCTGTTGACATTTGATAGTTTACTGTTCTAAGTGACACTCTTGAGCC-
|| | | |||| | | | | ||| || || |||| | || || || ||| || | || |||| |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| || | |||| | | | || |
--------------tatgtttttgttgttggaaat--ctaaggctatttgatattacaaactccttgc---tacttca-aatggtttggtgagaactaacagtttccatacaaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTT-CAAACAAGAATAGCAGCATCACTTAT

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G382240_T01 (Zea mays), 3'ss of exon 12
gtatgtcatacagacttgatcaagctgttttttactgccacgtatatgcaatgcaacttctgtcttgtgaacatgccataacaagttactgacaagttac--tttctgtacaaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAATTGTCTGTTGACATTTGATAGTTTACTGTTCTAA--GTGACACTCTTGAGCC
|| | | |||| | | | | ||| || || |||| | || || || ||| || | || |||| |||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||| || | |||| || || || | |
--------------tatgtttttgttgttggaaat--ctaaggctatttgatattacaaactccttgc---tacttca-aatggtttggtgagaactaacagtttccatacaaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTTCAAACAAGAATAGTAGCATCACTTAT--

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM5G850355_T04 (Zea mays), 3'ss of exon 10
gtatgtcatacagacttgatcaagctgttttttactgccacgtatatgcaatgcaacttctgtcttgtgaacatgccataacaagttactgacaagttac--tttctgtacaaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAATTGTCTGTTGACATTTGATAGTTTACTGTTCTAAGTGACACTCTTGAGCC-
|| | | |||| | | | | ||| || || |||| | || || || ||| || | || |||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| || | |||| | | | || |
--------------tatgtttttgttgttggaaat--ctaaggctatttgatattacaaactccttgc---tacttca-aatggtttggtgagaactaacagtttccatacaaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTT-CAAACAAGAATAGCAGCATCACTTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88517083|gb|CI444737.1|CI444737
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88956166|gb|CI092454.1|CI092454
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88269320|gb|CI380618.1|CI380618
EST:     CAGCCAACAAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTAGAGTAAAT
genomic: CAGCCAAC-AATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86258904|gb|CI004448.1|CI004448
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88544057|gb|CI474119.1|CI474119
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88461191|gb|CI547371.1|CI547371
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88985654|gb|CI016363.1|CI016363
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|3766855|gb|AU030965.1|AU030965
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88203677|gb|CI203526.1|CI203526
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|163917780|gb|EG711302.1|EG711302
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|89170298|gb|CI039575.1|CI039575
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|89178076|gb|CI391255.1|CI391255
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|11414339|gb|AU165132.1|AU165132
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88289213|gb|CI553189.1|CI553189
EST:     TCAGCCAACCATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88239782|gb|CI238944.1|CI238944
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88263428|gb|CI367202.1|CI367202
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|89197813|gb|CI013803.1|CI013803
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86422896|gb|CI060469.1|CI060469
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|33661637|gb|CF292604.1|CF292604
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCCAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86844003|gb|CI336703.1|CI336703
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88977911|gb|CI384393.1|CI384393
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCCTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88243911|gb|CI243033.1|CI243033
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88254319|gb|CI352945.1|CI352945
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|27554138|gb|CA998038.1|CA998038
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|163925975|gb|EG709675.1|EG709675
EST:     GAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: GAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86546047|gb|CI186253.1|CI186253
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86493119|gb|CI135752.1|CI135752
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88852675|gb|CI008868.1|CI008868
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|89197364|gb|CI009984.1|CI009984
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88523673|gb|CI451521.1|CI451521
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86509053|gb|CI151686.1|CI151686
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88965320|gb|CI009356.1|CI009356
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|3767760|gb|AU031787.1|AU031787
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88995416|gb|CI036991.1|CI036991
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88375025|gb|CI523290.1|CI523290
EST:     TCAGCCCACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88236034|gb|CI235236.1|CI235236
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88452218|gb|CI552926.1|CI552926
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88221720|gb|CI221676.1|CI221676
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88252208|gb|CI350636.1|CI350636
EST:     CAGCCAACAATATTGAAATTGGAGTTATTCGATCTGAGCCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: CAGCCAACAATATTGAAATTGGAGTTATTCGATCTGA-CCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|33656047|gb|CF278661.1|CF278661
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|87028711|gb|CI349430.1|CI349430
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|87032496|gb|CI266136.1|CI266136
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|89190657|gb|CI392510.1|CI392510
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88473338|gb|CI410609.1|CI410609
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86494880|gb|CI137513.1|CI137513
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|87029179|gb|CI276447.1|CI276447
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88995615|gb|CI022938.1|CI022938
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86602433|gb|CI264761.1|CI264761
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|29613823|gb|CB618836.1|CB618836
EST:     TCAGCCAACAATATGGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88985585|gb|CI016294.1|CI016294
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86826710|gb|CI364238.1|CI364238
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86868986|gb|CI334358.1|CI334358
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88385141|gb|CI561797.1|CI561797
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88489108|gb|CI426380.1|CI426380
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|27576119|gb|CA998813.1|CA998813
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGACGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88201510|gb|CI201865.1|CI201865
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88259408|gb|CI363701.1|CI363701
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86525993|gb|CI166199.1|CI166199
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|89171067|gb|CI040344.1|CI040344
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|58586930|gb|CF985238.1|CF985238
EST:     GCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88503429|gb|CI430935.1|CI430935
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|396941624|gb|HO188281.1|HO188281
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|33655926|gb|CF278540.1|CF278540
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88220149|gb|CI219709.1|CI219709
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88240749|gb|CI239911.1|CI239911
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88456958|gb|CI529159.1|CI529159
EST:     TCAGCCAACAATAGTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGGTGGAGTAAA
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGG-TGGAGTAAA
EST: gi|25797837|gb|CA753798.1|CA753798
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88488525|gb|CI425796.1|CI425796
EST:     TCAGCCAACAATATTG-AATTGGAGTTATTCGATCTGACCGTG-ATTCAA                         A-TTCTAACCCCGGCAGAAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAA
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAG-AGATCAAGGATTTCTTGGAAGAGGTGGAGTAAA
EST: gi|88544425|gb|CI472522.1|CI472522
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88963243|gb|CI026908.1|CI026908
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|86834955|gb|CI346039.1|CI346039
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACTGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|33803410|gb|CF327579.1|CF327579
EST:     TCAGCCAACGATATTGAAATTGGAGTTATTCGATCTGCCCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|33655042|gb|CF277656.1|CF277656
EST:     TCAGCCAACAATATCGAAATTGGAGCTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|5771116|gb|AU078005.1|AU078005
EST:     CAGCCAACAATATTGAAATTGGAGTTATT-GCATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: CAGCCAACAATATTGAAATTGGAGTTATTCG-ATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
EST: gi|88901506|gb|CI008934.1|CI008934
EST:     TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA                         AGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT
genomic: TCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAgtatgtcata ... caaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtgaacatgccataacaagttactgacaagttactttctgtacaaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAATTGTCTGTTGACATTTGATAGTTTACTGTTCTAAGTGACACTCTTGAGCC
                       tactgac  putative branch site (score: 1)
 tacaaaat  TA-rich tract