1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aatctgtttgttggaatccatgctaaattgttattttgtttttgcatgttatgcttcccagtttggtcatttataaactttttatataacttgtattcagGTTGTGGAAGCATTTAAGATTTTGACTTCCGATGATAGAGTGAAGGCTATTCTAGTGAACATTTTTGGTGGTATCATGAAATGTGATGTGATAGCAAGTG
species | Oryza sativa |
transcript | LOC_Os02g40830.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTACGCCTGCCAATTTTCTTGATGTTGGTGGAAGTGCATCAGAGGGACAG GTTGTGGAAGCATTTAAGATTTTGACTTCCGATGATAGAEST: gi|29662111|gb|CB658386.1|CB658386
genomic: GTACGCCTGCCAATTTTCTTGATGTTGGTGGAAGTGCATCAGAGGGACAGgtataataag ... ttgtattcagGTTGTGGAAGCATTTAAGATTTTGACTTCCGATGATAGA
EST: GTACGCCTGCCAATTTTCTTGATGTTGGTGGAAGTGCATCAGAGGGACAG GTTGTGGAAGCATTTAAGATTTTGACTTCCGATGATAGAGTGAAGGCTATTEST: gi|58689592|gb|CK078279.1|CK078279
genomic: GTACGCCTGCCAATTTTCTTGATGTTGGTGGAAGTGCATCAGAGGGACAGgtataataag ... ttgtattcagGTTGTGGAAGCATTTAAGATTTTGACTTCCGATGATAGAGTGAAGGCTATT
EST: CAATTTTCTTGATGTTGGTGGAAGTGCATCAGAGGGACAG GTTGTGGAAGCATTTAAGATTTTGACTTCCGATGATAGAGTGAAGGCTATTEST: gi|29662329|gb|CB658604.1|CB658604
genomic: CAATTTTCTTGATGTTGGTGGAAGTGCATCAGAGGGACAGgtataataag ... ttgtattcagGTTGTGGAAGCATTTAAGATTTTGACTTCCGATGATAGAGTGAAGGCTATT
EST: GTACGCCTGCCAATTTTCTTGATGTTGGTGGAAGTGCATCAGAGGGACAG GTTGTGGAAGCATTTAAGATTTTGACTTCCGATGATAGAGTGAAGGCTATT
genomic: GTACGCCTGCCAATTTTCTTGATGTTGGTGGAAGTGCATCAGAGGGACAGgtataataag ... ttgtattcagGTTGTGGAAGCATTTAAGATTTTGACTTCCGATGATAGAGTGAAGGCTATT
atgttatgcttcccagtttggtcatttataaactttttatataacttgtattcagGTTGTGGAAGCATTTAAGATTTTGACTTCCGATGATAGAGTGAAGGCTATTCTAGTGAACATTTTTGGTGGTATCATGAAATGTGATGTGATAGCAAGTG
atataac putative branch site (score: 3)
tcatttataaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctgtttgttggaatccatgctaaattgttattttgtttttgcatgttatgcttcccagtttggtcatttataaactttttatataacttgtattcagGTTGTGGAAGCATTTAAGATTTTGACTTCCGATGATAGAGTGAAGGCTATTCTAGTGAACATTTTTGGTGGTATCATGAAATGTGATGTGATAGCAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG