1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttcaagtaccctttttttttagattttcttgaggttcacaaggatgtacttgtatatccacaattctgggtggctatatcattcttcttttccttgtagATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCTACACGTGTCCGTGAAGCAATTGCAGAACGAGGGTGGTCTGTGGGATGAT
species | Oryza sativa |
transcript | LOC_Os02g33230.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGAT ATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCTEST: gi|88985474|gb|CI002991.1|CI002991
genomic: AGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGATgtaagtctat ... ttccttgtagATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCT
EST: AGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGAT ATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCTEST: gi|88969802|gb|CI383304.1|CI383304
genomic: AGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGATgtaagtctat ... ttccttgtagATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCT
EST: CGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGAT ATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCTEST: gi|88906754|gb|CI375826.1|CI375826
genomic: CGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGATgtaagtctat ... ttccttgtagATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCT
EST: AGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGAT ATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCTEST: gi|86501379|gb|CI144012.1|CI144012
genomic: AGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGATgtaagtctat ... ttccttgtagATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCT
EST: AGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGAT ATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCTEST: gi|38472562|gb|CF956694.1|CF956694
genomic: AGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGATgtaagtctat ... ttccttgtagATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCT
EST: AGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGAT ATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCTEST: gi|88472302|gb|CI409573.1|CI409573
genomic: AGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGATgtaagtctat ... ttccttgtagATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCT
EST: GGATTGGAAGAT ATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCTEST: gi|88269857|gb|CI381155.1|CI381155
genomic: GGATTGGAAGATgtaagtctat ... ttccttgtagATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCT
EST: GCGAGGAGTTGTCCATCCTTTCACTGGATTTGAAGAT ATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTA-TGAAGTAGCTEST: gi|29677033|gb|CB673308.1|CB673308
genomic: GCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGATgtaagtctat ... ttccttgtagATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCT
EST: AGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGAT ATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCT
genomic: AGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGATTGGAAGATgtaagtctat ... ttccttgtagATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCT
tgtacttgtatatccacaattctgggtggctatatcattcttcttttccttgtagATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCTACACGTGTCCGTGAAGCAATTGCAGAACGAGGGTGGTCTGTGGGATGAT
ctatatcattcttctt CT-rich tract
tatatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaagtaccctttttttttagattttcttgaggttcacaaggatgtacttgtatatccacaattctgggtggctatatcattcttcttttccttgtagATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCTACACGTGTCCGTGAAGCAATTGCAGAACGAGGGTGGTCTGTGGGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - - - - - - - - - gtacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgggtg