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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgcctaccatttgtatacatttttttttgggcgtctgttggtaatttatgattttcctgtactatgctggctggtattaattttaatattgcaatcagGAGCCAAAGATCAACACGTATGCAAACTTTAGGGATGAGGTGCTTCCAAGAATCAAAAAGCTTGGATACAATGCAGTGCAAATAATGGCAATTCAAGAGC

Basic information

species Oryza sativa
transcript LOC_Os02g32660.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g32660.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G032628_T01 (Zea mays), 3'ss of exon 9
--catgcctaccatttgtatacatttttttttgggcgtctgttggtaatttatgattttcctgtactatgctggctggtattaattttaatattgcaatcagGAGCCAAAGATCAACACGTATGCAAACTTTAGGGATGAGGTGCTTCCAAGAATCAAAAAGCTTGGATACAATGCAGTGCAAATAATGGCAATTCAAGAGC
    | | ||| || |   | || |  |  ||   | | |   | ||   | |  || || |||  |   || | |  |        |  | |||  || |||| || ||||| ||||| |||| ||||||||||||||| || || |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
attttacatac-atgttctttcactgatcattatccttttccggctatcattttgttatcttgt-ttgcactagataattgcctgcattctcttgtgattagGAACCGAAGATAAACACATATGTAAACTTTAGGGATGAAGTCCTCCCAAGAATAAAAAAACTTGGATACAATGCAGTGCAAATAATGGCAATCCAAGAGC

upper sequence: LOC_Os02g32660.1 (Oryza sativa), 3'ss of exon 9
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 3'ss of exon 9
--------------------------------------------------------------------------------------catgcctaccatttgtata-catttttttttgggcgt-------ctgttggtaatttatg---attttcctgtactatgctggctggtattaattttaatattgcaatcagGAGCCAAAGATCAACACGTATGCAAACTTTAGGGATGAGGTGCTTCCAAGAATCAAAAAGCTTGGATACAATGCAGTGCAAATAATGGCAATTCAAGAGC
                                                                                      ||  |      |||||  |  || ||| ||||    |         | |   ||||| ||   ||||  || ||  | | ||  |  | | | | |   | ||     ||||| |||| | |||| |||||||| |||||||| ||||| || |||||  | ||||||||||||||||| ||||| || ||||| ||||| || ||||| |
gtgtgtgtctggctccttgtcttaaataattatgttttggtccttaacatctgtgtaccaagcttctttataacgtatcaatatgccacactgttggtttgttcagtatgtttgtttgactataataacatagatcccaatttctggatatttctctatatcacg-tgaataatgtcagtgtacttgttatg--cagGAACCAATGGTCAATACGTATGCTAACTTTAGAGATGATGTTCTTCCCCGCATCAAAAAGCTTGGATATAATGCTGTTCAAATTATGGCCATACAAGAAC

upper sequence: LOC_Os02g32660.1 (Oryza sativa), 3'ss of exon 9
lower sequence: Vv08s0007g03750.t01 (Vitis vinifera), 3'ss of exon 9
catgcctaccatttgtatacatttttttttgggcgtctgttggtaatttatgattttcctgtactatgctggctggtattaattttaatattgcaat-cagGAGCCAAAGATCAACACGTATGCAAACTTTAGGGATGAGGTGCTTCCAAGAATCAAAAAGCTTGGATACAATGCAGTGCAAATAATGGCAATTCAAGAGC
 ||    |  ||||  |||       |      | ||  |  |   |  || ||          | |     ||  | ||| | || |  |||  ||  ||||||||    ||||||| ||||| |||||||| ||||| ||||| ||  | ||||||| |||||| || ||||| || || |||||||||||||| ||||
-attggaaaaatttaaatatccaccctacccctcatccttatgctttcaattatgcatagaattttttaatactcattttactgttgactttgagatgtagGAGCCAGTAGTCAACACATATGCCAACTTTAGAGATGATGTGCTACCTCGCATCAAAAGGCTTGGTTATAATGCTGTCCAGATAATGGCAATTCAGGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatgattttcctgtactatgctggctggtattaattttaatattgcaatcagGAGCCAAAGATCAACACGTATGCAAACTTTAGGGATGAGGTGCTTCCAAGAATCAAAAAGCTTGGATACAATGCAGTGCAAATAATGGCAATTCAAGAGC
                               tattaattttaatatt  TA-rich tract