1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttctactcagcattcatcttgcacattatgttcatttatattctttaatttgagctccgtatgtgacaaatggttggtctgcgttctttatttgctttagATGACACCGAAGGAGGCATTTCGGGATCTTTCACACAAATTCCATGGCAAGGCACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTATCGGGATG
species | Oryza sativa |
transcript | LOC_Os02g30730.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAAAGATATTCGCATAGAAAGAATTGATGAATTTGGTCGAGTG ATGACACCGAA-GAGGCATTTCGGGATCTTTCACACAAATTCCATGGCAAGEST: gi|218495939|gb|FG948495.1|FG948495
genomic: AAAAGATATTCGCATAGAAAGAATTGATGAATTTGGTCGAGTGgtaagtacct ... tttgctttagATGACACCGAAGGAGGCATTTCGGGATCTTTCACACAAATTCCATGGCAAG
EST: ATGGACCAAAAGATATTCGCATAGAAAGAATTGATGAATTTGGTCGAGTG ATGACACCGAAGGAGGCATTTCGGGATCTTTCACACAAATTCCATGGCAAG
genomic: ATGGACCAAAAGATATTCGCATAGAAAGAATTGATGAATTTGGTCGAGTGgtaagtacct ... tttgctttagATGACACCGAAGGAGGCATTTCGGGATCTTTCACACAAATTCCATGGCAAG
taatttgagctccgtatgtgacaaatggttggtctgcgttctttatttgctttagATGACACCGAAGGAGGCATTTCGGGATCTTTCACACAAATTCCATGGCAAGGCACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTATCGGGATG
ctttaat putative branch site (score: 22)
ttctttatttgcttt putative PPT
ttctttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctactcagcattcatcttgcacattatgttcatttatattctttaatttgagctccgtatgtgacaaatggttggtctgcgttctttatttgctttagATGACACCGAAGGAGGCATTTCGGGATCTTTCACACAAATTCCATGGCAAGGCACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTATCGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - -gcattca
- - - - - - - - tcttgca
- - - - - - - - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggttg