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gtaagctgccttctgtgttatcttattaacatgattcatacaccatcttttttcacatccaacttaaacctttttcttttctacagATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG
species | Oryza sativa |
transcript | LOC_Os02g27950.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATT ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGEST: gi|33658414|gb|CF281027.1|CF281027
genomic: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG
EST: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATT ATATCCTGAAGGGTGGCAGGTCATTCGATTTCTGAA-EST: gi|33797329|gb|CF324527.1|CF324527
genomic: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATC-TGAAGG-TGGCAGGTCAT-CGATTTCTGAAG
EST: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATT ATATCTGAAGGTGGCAGGTCATCGATTTCTGEST: gi|58674525|gb|CK063212.1|CK063212
genomic: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATCTGAAGGTGGCAGGTCATCGATTTCTG
EST: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATT ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGEST: gi|58677564|gb|CK066251.1|CK066251
genomic: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG
EST: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATT ATATCTGAAGGTGGCAGGTCGATCGATTTCTGAAGEST: gi|218478232|gb|FG962363.1|FG962363
genomic: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATCTGAAGGTGGCAGGTC-ATCGATTTCTGAAG
EST: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATT ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGEST: gi|58689025|gb|CK077712.1|CK077712
genomic: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG
EST: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATT ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGEST: gi|56157273|gb|D39206.2|D39206
genomic: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG
EST: AGATAGCAGTGGTAATAGGGGCACAAGCAATTTTGCAAACTGAGGATATT ATATCTGNAGGTGGCAGGTCATCGEST: gi|218494729|gb|FG965196.1|FG965196
genomic: AGATAGCAGTGGTAATAGGGACACAAGCAATTT-GCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATCTGAAGGTGGCAGGTCATCG
EST: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATT ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGEST: gi|33675902|gb|CF304141.1|CF304141
genomic: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG
EST: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATT ATATCTGANAG-TGGCAGGTCATCGATTTCTGAAGEST: gi|33658429|gb|CF281042.1|CF281042
genomic: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATCTGA-AGGTGGCAGGTCATCGATTTCTGAAG
EST: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATT ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGEST: gi|218504451|gb|FG953021.1|FG953021
genomic: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG
EST: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATT ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGEST: gi|218498152|gb|FG965352.1|FG965352
genomic: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG
EST: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATT ATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG
genomic: AAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAACTGAGAATATTgtaagctgcc ... ttttctacagATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG
tgattcatacaccatcttttttcacatccaacttaaacctttttcttttctacagATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG
cctttttcttttctac CT-rich tract
tttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgccttctgtgttatcttattaacatgattcatacaccatcttttttcacatccaacttaaacctttttcttttctacagATATCTGAAGGTGGCAGGTCATCGATTTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG