1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcataaatcgcctagatgatgtttttcaagtggtaattactggcttgccgcaatgtttggagttcacttttaacatacatttattcctttgcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTCCTGACTCCTGCAAATCCAATTGAAAAACTAGAAGGAGCTATGGAAGCA
species | Oryza sativa |
transcript | LOC_Os02g15550.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|27546253|gb|CA764321.2|CA764321
genomic: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|38479602|gb|CF963699.1|CF963699
genomic: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATAGCCGAG TGGTGTGATTGGGTTTCTAGCTATGTGCCAAAGAAGGTCCACCAGTCAACTEST: gi|87027956|gb|CI276312.1|CI276312
genomic: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCT-GCTATGTGCCAAAGAAGGTCCACCAGTCAACT
EST: TGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|87010799|gb|CI312491.1|CI312491
genomic: TGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTNTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|29667241|gb|CB663516.1|CB663516
genomic: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|86859105|gb|CI277026.1|CI277026
genomic: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: CGAGTGTCCCGACATATTCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|38471600|gb|CF955731.1|CF955731
genomic: CGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|87028025|gb|CI257185.1|CI257185
genomic: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|29657801|gb|CB654076.1|CB654076
genomic: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|88993298|gb|CI257726.1|CI257726
genomic: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: TCCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|86477600|gb|CI120233.1|CI120233
genomic: T-CAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: GGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|58678117|gb|CK066804.1|CK066804
genomic: GGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|88850542|gb|CI093223.1|CI093223
genomic: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: GGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|29642052|gb|CB647059.1|CB647059
genomic: GGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|29619281|gb|CB624293.1|CB624293
genomic: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTEST: gi|29672899|gb|CB669174.1|CB669174
genomic: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
EST: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAG TGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
genomic: TTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcatt ... gcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTT
tgccgcaatgtttggagttcacttttaacatacatttattcctttgcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTCCTGACTCCTGCAAATCCAATTGAAAAACTAGAAGGAGCTATGGAAGCA
ttttaac putative branch site (score: 2)
ttcctttgc putative PPT
ttttaacatacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcataaatcgcctagatgatgtttttcaagtggtaattactggcttgccgcaatgtttggagttcacttttaacatacatttattcctttgcatttgcagTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTCCTGACTCCTGCAAATCCAATTGAAAAACTAGAAGGAGCTATGGAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - -atgatgt
- - - - - - - - - - - - - - - - - - - - -ggcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - atgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acataca