1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caaagatgtgtgttgtgatcctgtgttggttgattttgcatcattctcctatcatttcttttccatttcactctcttactaacacaaagttaatttgtagATTACCATCATGGAAAACCATCTCTTGATTGGAGCAAGCGTATGCGGATTGCTGTTGGGGCAGCCAGGGGACTGCTGTATCTTCACGAACAATGCAATCC
species | Oryza sativa |
transcript | LOC_Os02g14120.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGATCGCTTGAGAG ATTACCATCATGGAAAACCATCTCTTGATTGGAACAAGCGTATGCGGATTGEST: gi|58695366|gb|CK084053.1|CK084053
genomic: TGATCGCTTGAGAGgtaattacaa ... taatttgtagATTACCATCATGGAAAACCATCTCTTGATTGGAGCAAGCGTATGCGGATTG
EST: GCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGATCGCTTGAGAG ATTACCATCATGGAAAACCATCTCTTGATTGGAACAAGCGTATGCGGATTGEST: gi|218479015|gb|FG963166.1|FG963166
genomic: GCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGATCGCTTGAGAGgtaattacaa ... taatttgtagATTACCATCATGGAAAACCATCTCTTGATTGGAGCAAGCGTATGCGGATTG
EST: GCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGATCGCTTGAGAG ATTACCATCATGGAAAACCATCTCTTGATTGGAACAAGCGTATGCGGATTG
genomic: GCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGATCGCTTGAGAGgtaattacaa ... taatttgtagATTACCATCATGGAAAACCATCTCTTGATTGGAGCAAGCGTATGCGGATTG
ctcctatcatttcttttccatttcactctcttactaacacaaagttaatttgtagATTACCATCATGGAAAACCATCTCTTGATTGGAGCAAGCGTATGCGGATTGCTGTTGGGGCAGCCAGGGGACTGCTGTATCTTCACGAACAATGCAATCC
aaagttaatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaagatgtgtgttgtgatcctgtgttggttgattttgcatcattctcctatcatttcttttccatttcactctcttactaacacaaagttaatttgtagATTACCATCATGGAAAACCATCTCTTGATTGGAGCAAGCGTATGCGGATTGCTGTTGGGGCAGCCAGGGGACTGCTGTATCTTCACGAACAATGCAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - tgtgttg
- - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaca