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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcataaacagcgagtggcaaataattaattgccacatcttaaaagtggtacaaagttaaatgtccctaactattattgtgatatgttactctgattgcagAATTTTACAGTGCCTGAGGATCTGTCAGCATATGACGGTATTGAACTACGTGTTAAGGGTGACGGGAGGCGGTATAAACTTATTGTGCGCACTAGCTTTG

Basic information

species Oryza sativa
transcript LOC_Os02g13970.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g13970.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G019358_T01 (Zea mays), 3'ss of exon 9
tcataaacagcgagtggcaaataattaattgccacatcttaaaagtggtacaaagtta----aatgtccc-taactattattgtgatatgttactctgattgcagAATTTTACAGTGCCTGAGGATCTGTCAGCATATGACGGTATTGAACTACGTGTTAAGGGTGACGGGAGGCGGTATAAACTTATTGTGCGCACTAGCTTTG
     |||   ||| |   ||   |||  |        |||  | ||   |  | |||     ||||  | |  |||  ||| |||||  |||||   || |||||||||||| ||||| ||||| |||||||||||||| ||||||||  |||| ||||| ||||| ||| | ||||||||||| ||| | || ||||||| ||
----gaact-tgagggagtaactcttatatatttttatttatcaatgcatcctatttatagtgatgttacattgctaacattatgatactttacttgaatggcagAATTTTACTGTGCCAGAGGACCTGTCAGCATATGATGGTATTGAGTTACGAGTTAATGGTGATGGGCGACGGTATAAACTCATTATACGGACTAGCTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58607818|gb|CK035851.1|CK035851
EST:     TACTGTCTCTACTTCAAATAACGGTGGCTTCACTAGTATAAGGACCAAAG                         AATTCTACAGTGCCTGAGGATCTGTCAGCATATGACGGTATTGAACTACG
genomic: TACTGTCTCTACTTCAAATAACGGTGGCTTCACTAGTATAAGGAC-AAAGgtacctactg ... ctgattgcagAATTTTACAGTGCCTGAGGATCTGTCAGCATATGACGGTATTGAACTACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtacaaagttaaatgtccctaactattattgtgatatgttactctgattgcagAATTTTACAGTGCCTGAGGATCTGTCAGCATATGACGGTATTGAACTACGTGTTAAGGGTGACGGGAGGCGGTATAAACTTATTGTGCGCACTAGCTTTG
                                        ttactct  CT-rich tract
                         tattattgtgatat  TA-rich tract