1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacccccaacaaccaagaaaactagcatgtacctttttatggattcgtggtaagacctaacttaacatgctctcatttcagGAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCTGTTAATTGCGAGCTCGTTAACGTGGTACGAGGCTTGATCAGCTCATGGC
species | Oryza sativa |
transcript | LOC_Os02g12570.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAATGTTGCCGGATTCATCCACGTGACAGATGTTGACATCCAAAG GAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCTEST: gi|88833206|gb|CI076689.1|CI076689
genomic: CAATGTTGCCGGATTCATCCACGTGACAGATGTTGACATCCAAAGgtacccccaa ... ctcatttcagGAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCT
EST: CAATGTTGCCGGATTCATCCACGTGACAGATGTTGACATCCAAAG GAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCTEST: gi|86482856|gb|CI125489.1|CI125489
genomic: CAATGTTGCCGGATTCATCCACGTGACAGATGTTGACATCCAAAGgtacccccaa ... ctcatttcagGAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCT
EST: CAATGTTGCCGGATTCATCCACGTGACAGATGTTGACATCCAAAG GAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCTEST: gi|86250783|gb|CI007646.1|CI007646
genomic: CAATGTTGCCGGATTCATCCACGTGACAGATGTTGACATCCAAAGgtacccccaa ... ctcatttcagGAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCT
EST: CGATGTTGCCGGATTCATCCACGTGACAGATGTTGACATCCAAAG GAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCGAGTAAGCTEST: gi|88833164|gb|CI076647.1|CI076647
genomic: CAATGTTGCCGGATTCATCCACGTGACAGATGTTGACATCCAAAGgtacccccaa ... ctcatttcagGAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCT
EST: CAATGTTGCCGGATTCATCCACGTGACAGATGTTGACACCCAAAG GAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCTEST: gi|88538218|gb|CI467230.1|CI467230
genomic: CAATGTTGCCGGATTCATCCACGTGACAGATGTTGACATCCAAAGgtacccccaa ... ctcatttcagGAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCT
EST: CCATGTTGCCGGATTCATCCACGTGACAGATGTTGACATCCAAAG GAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCT
genomic: CAATGTTGCCGGATTCATCCACGTGACAGATGTTGACATCCAAAGgtacccccaa ... ctcatttcagGAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCT
atgtacctttttatggattcgtggtaagacctaacttaacatgctctcatttcagGAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCTGTTAATTGCGAGCTCGTTAACGTGGTACGAGGCTTGATCAGCTCATGGC
ctctcatttc CT-rich tract
tttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacccccaacaaccaagaaaactagcatgtacctttttatggattcgtggtaagacctaacttaacatgctctcatttcagGAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCTGTTAATTGCGAGCTCGTTAACGTGGTACGAGGCTTGATCAGCTCATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA