1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tggtcatattagagaagaaaaaaaaacctggtggggccactaatatgctccataaaatcattgtgtcagcatagttgacccttagatcatttttttgcagGATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGGCAGAGAACACCCCAATTTGGAATGGGATATGCCATGCCATATCAGACTG
species | Oryza sativa |
transcript | LOC_Os02g11820.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGCACCTAATACTGACAGTAGATCCATTGGCCGGAAAGAACTTCCAGCG GATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGEST: gi|569659|gb|D40508.1|D40508
genomic: CAGCACCTAATACTGACAGTAGATCCATTGGCCGGAAAGAACTTCCAGCGgtatgtgatt ... ttttttgcagGATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGG
EST: CAGCACCTAATACTGACAGTAGATCCATTGGCCGGAAAGAACTTCCAGCG GATATCTTTACTTCGTTATATCCACCAGGEST: gi|86837601|gb|CI345784.1|CI345784
genomic: CAGCACCTAATACTGACAGTAGATCCATTGGCCGGAAAGAACTTCCAGCGgtatgtgatt ... ttttttgcagGATATCTTTACTTCGTTATATCCACCAGG
EST: CAGCACCTAATACTGACAGTAGATCCATTGGCCGGAAAGAACTTCCAGCG GATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGGEST: gi|86596732|gb|CI286645.1|CI286645
genomic: CAGCACCTAATACTGACAGTAGATCCATTGGCCGGAAAGAACTTCCAGCGgtatgtgatt ... ttttttgcagGATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGG
EST: CAGCACCTAATACTGACAGTAGATCCATTGGCCGGAAAGAACTTCCAGCG GATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGGEST: gi|29678350|gb|CB674625.1|CB674625
genomic: CAGCACCTAATACTGACAGTAGATCCATTGGCCGGAAAGAACTTCCAGCGgtatgtgatt ... ttttttgcagGATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGG
EST: CAGCACCTAATACTGACAGTAGATCCATTGGCCGGAAAGAACTTCCAGCG GATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGGEST: gi|569941|gb|D40790.1|D40790
genomic: CAGCACCTAATACTGACAGTAGATCCATTGGCCGGAAAGAACTTCCAGCGgtatgtgatt ... ttttttgcagGATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGG
EST: CAGCACCTAATACTGACAGTAGATCCATTGGCCGGAAAGAACTTCCAGCG GATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGG
genomic: CAGCACCTAATACTGACAGTAGATCCATTGGCCGGAAAGAACTTCCAGCGgtatgtgatt ... ttttttgcagGATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGG
tgctccataaaatcattgtgtcagcatagttgacccttagatcatttttttgcagGATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGGCAGAGAACACCCCAATTTGGAATGGGATATGCCATGCCATATCAGACTG
agttgac putative branch site (score: 14)
tcattttttt putative PPT
ttagatcattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtcatattagagaagaaaaaaaaacctggtggggccactaatatgctccataaaatcattgtgtcagcatagttgacccttagatcatttttttgcagGATATCTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGGCAGAGAACACCCCAATTTGGAATGGGATATGCCATGCCATATCAGACTG
- - - - - -gagaagaa
- - - - - - - - -aaaaaaa
- - - - - - - - - - - - - cctggtg
- - - - - - - - - - - - - - - - - - - - - - -tgctcca