1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttattgtctcggctgctgctctaacactaaaatagtgtgtttttttatgcctagaaacagaaatattactgagtttttcttctgctacgaaattccagGTGTGAGCTGACATCCCGTGCAAGATGAGTAGTAGATTGATTCATGTGTTCTGAACAATTAGAAGACTAAACGAAGGCAGCAAAGCTCAGTAGCCAACAC
species | Oryza sativa |
transcript | LOC_Os02g10630.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTTGAGGGAGATATTTTCAGAAGTTGAGAAGGAGCTTGCATCNNNNNNNG GTGTGAGCTGACATCCCGTGCAAGATGAGTAGTAGATTGATTCATGTGTTC
genomic: GTTGAGGGAGATATTTTCAGAAGTTGAGAAGGAGCTTGCATCAAAAAAAGgtatctgttt ... gaaattccagGTGTGAGCTGACATCCCGTGCAAGATGAGTAGTAGATTGATTCATGTGTTC
tttatgcctagaaacagaaatattactgagtttttcttctgctacgaaattccagGTGTGAGCTGACATCCCGTGCAAGATGAGTAGTAGATTGATTCATGTGTTCTGAACAATTAGAAGACTAAACGAAGGCAGCAAAGCTCAGTAGCCAACAC
aaacagaaatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttattgtctcggctgctgctctaacactaaaatagtgtgtttttttatgcctagaaacagaaatattactgagtttttcttctgctacgaaattccagGTGTGAGCTGACATCCCGTGCAAGATGAGTAGTAGATTGATTCATGTGTTCTGAACAATTAGAAGACTAAACGAAGGCAGCAAAGCTCAGTAGCCAACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - -tgctgct
- - - - - - - - - - - - - -actaaaa
- - - - - - - - - - - - - - - - - - -tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - -tgcctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttactga