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gtaggattttctcatggcatttcttcttttatatttttatattaatagatatttgattaaaacataaactgatgattattactgcatttcattttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTAACTTCAAGCATCT
species | Oryza sativa |
transcript | LOC_Os02g10310.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|29672587|gb|CB668862.1|CB668862
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|29612852|gb|CB617865.1|CB617865
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|29657905|gb|CB654180.1|CB654180
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|86599975|gb|CI258315.1|CI258315
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: AAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGEST: gi|29671043|gb|CB667318.1|CB667318
genomic: AAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAA-GGAGCAAAGTGAACCATCAATGGTTGCAAAGAG
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|163929432|gb|EG713401.1|EG713401
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|117232667|gb|CT861058.1|CT861058
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|29637362|gb|CB642371.1|CB642371
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|88904130|gb|CI006363.1|CI006363
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|29672144|gb|CB668419.1|CB668419
genomic: TAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|88691997|gb|CI735572.1|CI735572
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|29636552|gb|CB641561.1|CB641561
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|29636597|gb|CB641606.1|CB641606
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|86496229|gb|CI138862.1|CI138862
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|29664840|gb|CB661115.1|CB661115
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|88690598|gb|CI734677.1|CI734677
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTACCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTEST: gi|27548667|gb|CA766758.2|CA766758
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
EST: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG GTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
genomic: TGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAGgtaggatttt ... tttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGT
gatatttgattaaaacataaactgatgattattactgcatttcattttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTAACTTCAAGCATCT
aactgat putative branch site (score: 3)
tttcattttct putative PPT
ttgattaaaacataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggattttctcatggcatttcttcttttatatttttatattaatagatatttgattaaaacataaactgatgattattactgcatttcattttctgtaagGTCTGGATTAAGCCCAAGGAGCAAAGTGAACCATCAATGGTTGCAAAGAGTAACTTCAAGCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG