1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...aaaatccattgataaaaccctcttattttgctgtttgtaattctttctaggtctccacacttaattaatttgccttttctattttaattcttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
species | Oryza sativa |
transcript | LOC_Os02g10070.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTT-CAAAAAGGCTATGACAAAGEST: gi|58695418|gb|CK084105.1|CK084105
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAG
EST: CCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAEST: gi|29614058|gb|CB619071.1|CB619071
genomic: CCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAEST: gi|14571277|gb|BI118645.1|BI118645
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAEST: gi|58599089|gb|CK009617.1|CK009617
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAEST: gi|29614020|gb|CB619033.1|CB619033
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAEST: gi|33794508|gb|CF323141.1|CF323141
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAEST: gi|58678175|gb|CK066862.1|CK066862
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAGEST: gi|58668188|gb|CK056874.1|CK056874
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAAG
EST: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAG GTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
genomic: TAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttg ... ttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
tctaggtctccacacttaattaatttgccttttctattttaattcttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
ttttaat putative branch site (score: 24)
ttcttattt CT-rich tract
ttaattaatttgcctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatccattgataaaaccctcttattttgctgtttgtaattctttctaggtctccacacttaattaatttgccttttctattttaattcttatttgcagGTGGAGAGTGAGTTTCAAAAAGCCTATGACAAAGGAATGTCAAAATCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - gataaaac
- - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - ctccaca