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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatcctttttcttacatatttcaaatttattgatgcaattcacatagtacttggtattcctacataaaaattctctctactatatacttttgccatatgtaattatatgtaaggtaacttattgagtaattcattgtttttgtctacagAAAGGATGGGAACCCATTTAATACCAGCATAGCTCCTTCTGCATCACCCTCTTCAACACCTACAGGCTCTACACCAACACAAACACCATCGTCACCTTCA

Basic information

species Oryza sativa
transcript LOC_Os02g07960.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07960.3 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G335638_T01 (Zea mays), 3'ss of exon 9
gtgagaatcctttttcttacatatttcaaatttattgatgcaattcacatagtacttggtattcctacataaaaattctctctactatatacttttgccatatgtaattatatgtaaggtaacttattgagtaattcattgtttttgtctacagAAAGGATGGGAACCCATTTAATACCAGCATAGCTCCTTCTGCATCACCCTCTTCAACACCTACAGGCTCTACACCAACACAAACACCATCGTCACCTTCA
||||||  | |||   |||| |||| |||| || ||| ||||   ||  |||| ||   | || ||  | |       ||| | ||||   | ||   ||  | | || ||  |    || || |||  | | ||| | |  ||||| ||||||||| |||||||| || |||||||||||||||||||| ||| | |||||||||||||||||||||||||||| |||||||||||||||||||||  |||||
gtgagatacttttcctttacctattgcaaacttcttggtgcagcccaattagtcctgtttttttctctaca------ttctgtcctat---ccttcaacactt-tgatgattgggccagttacatat-aactcattaacttcttttgcctacagAAATGATGGGAATCCTTTTAATACCAGCATAGCTCCCTCTACCTCACCCTCTTCAACACCTACAGGCTCTAGACCAACACAAACACCATCGTCTTCTTCA

upper sequence: LOC_Os02g07960.3 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G020986_T01 (Zea mays), 3'ss of exon 9
gtgagaatcctttttcttacatatttcaaatttattgatgcaattcacatagtacttggtattcctacataaaaattctctctactatatacttttgccatatgtaattatatgtaaggtaacttattgagtaattcattgtttttgtctacagAAAGGATGGGAACCCATTTAATACCAGCATAGCTCCTTCTGCATCACCCTCTTCAACACCTACAGGCTCTACACCAACACAAACACCATCGTCACCTTCA------
||||||  | |||   |||| |||  |||| || ||| ||||   ||  |||| | || | ||||| |   | | |   | |||       | ||   ||  | | || ||  |    || || |||  | | ||| | |  |||||  |||||||| |||||||| || |||||||||||||||||||| ||  | ||||||||||   |||||||||||||   |||||||||||||||||||||  |||||      
gtgagacacttttcctttacctatagcaaacttcttggtgcagcccaattagt-cctgtttttccttctctacattctgccctat------ccttcaacactt-tgatgattggaccagttacatat-aactcattaacttcttttgcgtacagAAATGATGGGAATCCTTTTAATACCAGCATAGCTCCCTCCACCTCACCCTCTT---CACCTACAGGCTC---ACCAACACAAACACCATCGTCCTCTTCATCCCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgtaattatatgtaaggtaacttattgagtaattcattgtttttgtctacagAAAGGATGGGAACCCATTTAATACCAGCATAGCTCCTTCTGCATCACCCTCTTCAACACCTACAGGCTCTACACCAACACAAACACCATCGTCACCTTCA
                 aggtaac  putative branch site (score: 3)
                                          tttttgtct  putative PPT
                                taattcattgttttt  TA-rich tract