1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gacggtagtagtatgcatcaccaagagtaatgataatttttggtcgtcttttggagaaattttatggagttgctgatcaaccctgttacttgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTGATTTCTCCTTGTGGTTTAAACCCGACAAATACCCTACCGACTTTTAAG
species | Oryza sativa |
transcript | LOC_Os02g07350.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAG CTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTEST: gi|29661947|gb|CB658222.1|CB658222
genomic: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGgtttgttctt ... tgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATT
EST: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAG CTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTEST: gi|14192112|gb|AU184323.1|AU184323
genomic: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGgtttgttctt ... tgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATT
EST: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAG CTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTEST: gi|66924326|gb|CX111174.1|CX111174
genomic: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGgtttgttctt ... tgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATT
EST: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAG CTTTTGGATCGGATTGGCCCTGCCACAGAAGATCEST: gi|86837390|gb|CI347823.1|CI347823
genomic: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGgtttgttctt ... tgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATC
EST: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAG CTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTEST: gi|94362390|gb|CI052303.1|CI052303
genomic: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGgtttgttctt ... tgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATT
EST: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAG CTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTEST: gi|88980653|gb|CI022366.1|CI022366
genomic: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGgtttgttctt ... tgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATT
EST: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAG CTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTEST: gi|12623076|gb|AU173289.1|AU173289
genomic: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGgtttgttctt ... tgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATT
EST: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAG CTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTEST: gi|88226163|gb|CI226079.1|CI226079
genomic: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGgtttgttctt ... tgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATT
EST: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAG CTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTEST: gi|88836626|gb|CI010882.1|CI010882
genomic: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGgtttgttctt ... tgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATT
EST: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAG CTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTEST: gi|22306217|gb|BQ907439.1|BQ907439
genomic: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGgtttgttctt ... tgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATT
EST: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAG CTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTEST: gi|88292259|gb|CI535053.1|CI535053
genomic: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGgtttgttctt ... tgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATT
EST: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAG CTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATT
genomic: CCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGgtttgttctt ... tgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATT
gtcttttggagaaattttatggagttgctgatcaaccctgttacttgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTGATTTCTCCTTGTGGTTTAAACCCGACAAATACCCTACCGACTTTTAAG
agaaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacggtagtagtatgcatcaccaagagtaatgataatttttggtcgtcttttggagaaattttatggagttgctgatcaaccctgttacttgacttgcagCTTTTGGATCGGATTGGCCCTGCCACAGAAGATCTTAAGAAGAAAGGAATTGATTTCTCCTTGTGGTTTAAACCCGACAAATACCCTACCGACTTTTAAG
- - - - - gtatgca
- - - - - - - - - -accaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttact