1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agttggtatctactatccatgtatttcagcaatttctgctgggataattctgcattaatgattagttccctcatgctcataatatattcttcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAGATAGCCTATGGCAATTCTTGGAATTGTACCTGCCATTGTTCTTCTCAC
species | Oryza sativa |
transcript | LOC_Os02g07210.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAEST: gi|86838295|gb|CI327687.1|CI327687
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGTTAEST: gi|88461529|gb|CI504656.1|CI504656
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAEST: gi|89196459|gb|CI399045.1|CI399045
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATNCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAEST: gi|88567031|gb|CI497748.1|CI497748
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAEST: gi|88516026|gb|CI443680.1|CI443680
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAEST: gi|88276608|gb|CI397410.1|CI397410
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCCAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAEST: gi|8858531|gb|AU095849.1|AU095849
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAEST: gi|157651555|gb|EX451189.1|EX451189
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCAC-GGCTGEST: gi|88907452|gb|CI090246.1|CI090246
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTG
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAEST: gi|88451001|gb|CI531596.1|CI531596
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: GTTAAGCTTCTGGAGTGAGGCGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAEST: gi|33683116|gb|CF311355.1|CF311355
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAEST: gi|88303817|gb|CI510622.1|CI510622
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: TTAAGGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAEST: gi|88552935|gb|CI482994.1|CI482994
genomic: TTAA-GCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAEST: gi|88378068|gb|CI501337.1|CI501337
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
EST: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAG ATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
genomic: GTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGgtgagtgttg ... tcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTA
aattctgcattaatgattagttccctcatgctcataatatattcttcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAGATAGCCTATGGCAATTCTTGGAATTGTACCTGCCATTGTTCTTCTCAC
cattaat putative branch site (score: 3)
tattcttcactttc putative PPT
tcataatatattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttggtatctactatccatgtatttcagcaatttctgctgggataattctgcattaatgattagttccctcatgctcataatatattcttcactttcagATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTCTAAGTAGGTAGATAGCCTATGGCAATTCTTGGAATTGTACCTGCCATTGTTCTTCTCAC
- - - - - - - atccatg
- - - - - - - - - - - - ttcagca
- - - - - - - - - - - - - - - - -ttctgct
- - - - - - - - - - - - - - - - - - - - - - - -ttctgca