Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacaaaaaaaaggaaccatcttttctctgcaaattctcaaatgaaggcatcaggatatctccaatatgtgttctgaacttctgaagttatgggtgtttcatctagactaatattgttctactctaaatgcagGAGTTGGCTCTGGAAAATGACTTGGCCGAGATTCTGAACGATGGGCTAGTGAAGGGGGCGTCATTTGCAGCATAAAAGTGCAAGGGGCCAGTAGATGTTA

Basic information

species Oryza sativa
transcript LOC_Os02g05820.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86866743|gb|CI343552.1|CI343552
EST:     GAGATAATTCTTCCATCGACCAAGGCCACCAGCGTTCAGTCAGCGACAAG                         GAGTT-GCTCTGGAAAATGACTTGGCCGAGATTCTGAACGATGGGCTAGTG
genomic: GAGATAATTCTTCCATCGACCAAGGCCACCAGCGTTCAGTCAGCGACAAGgtaaaacaaa ... ctaaatgcagGAGTTGGCTCTGGAAAATGACTTGGCCGAGATTCTGAACGATGGGCTAGTG
EST: gi|86842547|gb|CI341715.1|CI341715
EST:     GAGATAATTCTTCCATCGACCAAGGCCACCAGCGTTCAGTCAGCGACAAG                         GAGTTGGCTCTGGAAAATGACTTGGCCGAGATTCTGAACGATGGGCTAGTG
genomic: GAGATAATTCTTCCATCGACCAAGGCCACCAGCGTTCAGTCAGCGACAAGgtaaaacaaa ... ctaaatgcagGAGTTGGCTCTGGAAAATGACTTGGCCGAGATTCTGAACGATGGGCTAGTG
EST: gi|88250970|gb|CI349200.1|CI349200
EST:     TCTTCCATCGACCAAGGCCACCAGCGTTCAGTCAGCGACAAG                         GAGTTGGCTCTGGAAAATGACTTGACCGAGATTCTGAACGATGGGCTAGTG
genomic: TCTTCCATCGACCAAGGCCACCAGCGTTCAGTCAGCGACAAGgtaaaacaaa ... ctaaatgcagGAGTTGGCTCTGGAAAATGACTTGGCCGAGATTCTGAACGATGGGCTAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctgaagttatgggtgtttcatctagactaatattgttctactctaaatgcagGAGTTGGCTCTGGAAAATGACTTGGCCGAGATTCTGAACGATGGGCTAGTGAAGGGGGCGTCATTTGCAGCATAAAAGTGCAAGGGGCCAGTAGATGTTA
                                      ttctactct  CT-rich tract
                              taatattgtt  TA-rich tract