1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttgttcatatagttactgttatcttttgcaatctcatcaatttcattatacaaaagagtcaaagctgttattttggtggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAGATTGACCGGGTCTATATCGGTTCTTGTACTGGAGGTAAAACTGAGGACT
species | Oryza sativa |
transcript | LOC_Os02g03260.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTATCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAGEST: gi|88340371|gb|CI659577.1|CI659577
genomic: GTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAG
EST: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGEST: gi|29677182|gb|CB673457.1|CB673457
genomic: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAG
EST: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAGEST: gi|218494441|gb|FG968569.1|FG968569
genomic: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAG
EST: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAGEST: gi|58666580|gb|CK055266.1|CK055266
genomic: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAG
EST: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAGEST: gi|88336267|gb|CI648854.1|CI648854
genomic: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAG
EST: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCTGEST: gi|29658442|gb|CB654717.1|CB654717
genomic: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTG
EST: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAGEST: gi|29628819|gb|CB633830.1|CB633830
genomic: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAG
EST: TAGTGACTACCCGNTTTGATGTATCCAAATTGGAGCCAGTTGTTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAGEST: gi|2312204|gb|C28359.1|C28359
genomic: TAGTGACTA-CCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAG
EST: TAGTGACTACCGGTTTGATGTATNCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTCCAA-GATGTCAAGEST: gi|29636583|gb|CB641592.1|CB641592
genomic: TAGTGACTACCGGTTTGATGTAT-CCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAG
EST: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAGEST: gi|88329810|gb|CI651478.1|CI651478
genomic: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAG
EST: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCEST: gi|88571723|gb|CI663096.1|CI663096
genomic: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACC
EST: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAEST: gi|29616438|gb|CB621450.1|CB621450
genomic: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAA
EST: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAGEST: gi|218490400|gb|FG966882.1|FG966882
genomic: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAG
EST: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAGEST: gi|29628818|gb|CB633829.1|CB633829
genomic: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAG
EST: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTGTTGCCAAG CCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAA
genomic: TTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcat ... ggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAA
ctcatcaatttcattatacaaaagagtcaaagctgttattttggtggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAGATTGACCGGGTCTATATCGGTTCTTGTACTGGAGGTAAAACTGAGGACT
aatttcattatacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttcatatagttactgttatcttttgcaatctcatcaatttcattatacaaaagagtcaaagctgttattttggtggacctgcagCCACATTCACCTGACAACCGTGCTCTAGCAAGAGAGTGCAAAGATGTCAAGATTGACCGGGTCTATATCGGTTCTTGTACTGGAGGTAAAACTGAGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG