1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacacaaatcaagcatctctatttctatctttattttttggaagacttgttcctgtatacttttagagttatgcctctgatttaacatttccttcgttgttgccagCGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTTTTGAGGAAGGACTGCGAAACCTGCGTGAAGCTCAATTAGTATCCCAAGGTGCAGTGGATA
species | Oryza sativa |
transcript | LOC_Os02g02710.4 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCAGCGATTGCTTCAAGATGTTCAATCCCGTTGACAAGACAACATTCGAT CGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTTTTGAGGAAGGAEST: gi|58685947|gb|CK074634.1|CK074634
genomic: CCAGCGATTGCTTCAAGATGTTCAATCCCGTTGACAAGACAACATTCGATgtacacaaat ... ttgttgccagCGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTTTTGAGGAAGGA
EST: CCAGCGATTGCTTCAAGATGTTCAATCCCGTTGACAAGACAACATTCGAT CGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTT
genomic: CCAGCGATTGCTTCAAGATGTTCAATCCCGTTGACAAGACAACATTCGATgtacacaaat ... ttgttgccagCGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTT
cctgtatacttttagagttatgcctctgatttaacatttccttcgttgttgccagCGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTTTTGAGGAAGGACTGCGAAACCTGCGTGAAGCTCAATTAGTATCCCAAGGTGCAGTGGATA
atttaac putative branch site (score: 3)
tttccttcgttgtt CT-rich tract
atttaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacaaatcaagcatctctatttctatctttattttttggaagacttgttcctgtatacttttagagttatgcctctgatttaacatttccttcgttgttgccagCGAGTCATTAATAAGTGGTGCATGGCCTTCCTTATACTTTTTGAGGAAGGACTGCGAAACCTGCGTGAAGCTCAATTAGTATCCCAAGGTGCAGTGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA