1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gcagggccatgcttctaatcattcattatataatttgtatcatatttgagggggaaactatattgtagcttcttaagtaatcttatttaattcatggcagGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAG
species | Oryza sativa |
transcript | LOC_Os01g74460.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCANNNNNNNGAT GAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATEST: gi|88309451|gb|CI655819.1|CI655819
genomic: CAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATgtgagtcaaa ... ttcatggcagGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGAT
EST: CAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCANNNNNNNGAT GAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATEST: gi|88332495|gb|CI651655.1|CI651655
genomic: CAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATgtgagtcaaa ... ttcatggcagGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGAT
EST: CAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCANNNNNNNGAT GAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGAT
genomic: CAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATgtgagtcaaa ... ttcatggcagGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGAT
ttgagggggaaactatattgtagcttcttaagtaatcttatttaattcatggcagGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAG
atttaat putative branch site (score: 4)
ttcttaagtaatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagggccatgcttctaatcattcattatataatttgtatcatatttgagggggaaactatattgtagcttcttaagtaatcttatttaattcatggcagGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA