1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtcgaccaatatttatattctttgcagtcctgctgattcatttgcttctgcgatcaatgacatgtcatatactcacatctgcttcaattctggtgaacagACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTC
species | Oryza sativa |
transcript | LOC_Os01g74330.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACGATAAG ACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGEST: gi|29638889|gb|CB643898.1|CB643898
genomic: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGgtaacacatg ... tggtgaacagACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAG
EST: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAG ACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGEST: gi|86413796|gb|CI068003.1|CI068003
genomic: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGgtaacacatg ... tggtgaacagACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAG
EST: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAG ACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGEST: gi|88968771|gb|CI098905.1|CI098905
genomic: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGgtaacacatg ... tggtgaacagACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAG
EST: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAG ACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGEST: gi|86435908|gb|CI107141.1|CI107141
genomic: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGgtaacacatg ... tggtgaacagACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAG
EST: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAG ACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGEST: gi|86492818|gb|CI135451.1|CI135451
genomic: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGgtaacacatg ... tggtgaacagACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAG
EST: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAG ACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGANNGAGAGGGTGEST: gi|88247830|gb|CI247679.1|CI247679
genomic: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGgtaacacatg ... tggtgaacagACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGA--GAGAGG-TG
EST: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAG ACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGEST: gi|29638928|gb|CB643937.1|CB643937
genomic: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGgtaacacatg ... tggtgaacagACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAG
EST: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAG ACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGEST: gi|29638888|gb|CB643897.1|CB643897
genomic: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGgtaacacatg ... tggtgaacagACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAG
EST: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAG ACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAG
genomic: TGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGgtaacacatg ... tggtgaacagACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAG
ttctgcgatcaatgacatgtcatatactcacatctgcttcaattctggtgaacagACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTC
tactcac putative branch site (score: 7)
tcatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgaccaatatttatattctttgcagtcctgctgattcatttgcttctgcgatcaatgacatgtcatatactcacatctgcttcaattctggtgaacagACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTC
- - accaata
- - - - - - - - - -ctttgca
- - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttc