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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtaagtggctttaccagtaggtactggtagcattatgatttcttgaatcataactttgttgacctttttttttttttgttgctacatacatacattcagCCGTTCAGAACACCGTCTATTGCTTCGAGCTGATAATGCTGATAGTCGGTTGACTCCTTTGGGACGAGATATTGGTTTGATAGATGATAGACGATGGGAG

Basic information

species Oryza sativa
transcript LOC_Os01g72980.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g72980.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G440344_T01 (Zea mays), 3'ss of exon 3
ggtaagtggctttaccagtaggtactggtagcattatgatttcttgaatcataactttgttgacctttttttt-tttttgttgctacatacat--acattcagCCGTTCAGAACACCGTCTATTGCTTCGAGCTGATAATGCTGATAGTCGGTTGACTCCTTTGGGACGAGATATTGGTTTGATAGATGATAGACGATGGGAG
  | |||   ||||    |   |  ||       | | ||    |    |  ||||         |||  ||| |||||| ||  ||||  ||  |||| |||| ||||||||||||| |||||||||||| | ||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||| ||||||
--tgagttcttttaatt-tttatgttgtctagtgtctaatcaaatatgactaaactccccccttttttcctttgtttttgctgggacatttatggacatccagCAGTTCAGAACACCGGCTATTGCTTCGATCAGATAATGCTGATAGTCGTTTGACCCCTTTGGGACGAGAGATTGGTTTAATAGATGATAGACGTTGGGAG

upper sequence: LOC_Os01g72980.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G481548_T01 (Zea mays), 3'ss of exon 9
ggtaagtggctttaccagtaggtactggtagcattatgatttcttgaatcataactttgttgacctttttttttttttgttgctacatacat--acattcagCCGTTCAGAACACCGTCTATTGCTTCGAGCTGATAATGCTGATAGTCGGTTGACTCCTTTGGGACGAGATATTGGTTTGATAGATGATAGACGATGGGAG
| |   ||  |||    |  |      ||   || |    |   | ||      |    ||    ||  ||| |||||||||  ||||  ||  |||| |||||||||||||||||| |||||||||||| | ||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||| ||||||
gttctttgagtttttatgctgtctagtgtctaatcaaatatgactaaactccccccccctt--ttttcctttgtttttgttgggacatttatggacatccagCCGTTCAGAACACCGGCTATTGCTTCGATCAGATAATGCTGATAGTCGTTTGACCCCTTTGGGACGAGAGATTGGTTTAATAGATGATAGACGTTGGGAG

upper sequence: LOC_Os01g72980.1 (Oryza sativa), 3'ss of exon 9
lower sequence: AT2G13440.1 (Arabidopsis thaliana), 3'ss of exon 9
-----ggtaagtggctttaccagtaggtactggtagcattatgatttcttgaatcataactttgttgac-ctttttttttttttgttgctacatacatacattcagCCGTTCAGAACACCGTCTATTGCTTCGAGCTGATAATGCTGATAGTCGGTTGACTCCTTTGGGACGAGATATTGGTTTGATAGATGATAGACGATGGGAG
      || |     |||    | | |||||  ||||  ||| | | |||      |   |||  | || |    |  |    |||   |   | |  |    ||||||||||||||| || ||  | ||||||  ||||||||| ||||||||  | || ||| |||| || ||  |||| ||||||||||||||||||||| ||
ttccacgtgaactattttgt--gcatgtactaatagc-ctattactactta---tgtgtgtttagtaacacggaataatcaaatgtgttttttttctcaacgacagCCGTTCAGAACATCGGCTTCTTCTTCGATTTGATAATGCGGATAGTCGACTAACGCCTCTGGGGCGTGAACTTGGATTGATAGATGATAGACGATGGAAG

upper sequence: LOC_Os01g72980.1 (Oryza sativa), 3'ss of exon 9
lower sequence: Vv04s0044g01690.t01 (Vitis vinifera), 3'ss of exon 9
ggtaagtggctttaccagtaggtactggtagcattatgatttcttgaatcataact-ttgttgacct----ttttttttttttgttgctacatacatacattcagCCGTTCAGAACACCGTCTATTGCTTCGAGCTGATAATGCTGATAGTCGGTTGACTCCTTTGGGACGAGATATTGGTTTGATAGATGATAGACGATGGGAG
     |     |||  | |    | | ||   || |     |  || ||||| | | || || |  |    || | |||| ||    ||       | |  | ||||| |||||||| ||  || | |||||| |||||||||| ||||||||  | || |||||||| || || ||||||||||||||||||||||| ||| | 
-----ggcttcttaaaatttaaaattagttcgatgaattaattgtgcatcattattgtttttaatgtccaattatattttcttaaacctttggttcttctcttagCCGCTCAGAACATCGATTACTTCTTCGATCTGATAATGCGGATAGTCGTCTCACACCTTTGGGGCGTGAAATTGGTTTGATAGATGATAGACGTTGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatcataactttgttgacctttttttttttttgttgctacatacatacattcagCCGTTCAGAACACCGTCTATTGCTTCGAGCTGATAATGCTGATAGTCGGTTGACTCCTTTGGGACGAGATATTGGTTTGATAGATGATAGACGATGGGAG
                    tttttttttttttgtt  TA-rich tract