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gtacctttgctccaaagcacttgccattggtggctgcatccaatagtatcttatctttgagtaggctctgtagtaggacattctatttactgaagtagttatgtacttgttaccacctgaaatccatctgaaccagGATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTATGGTGCATATAATGCATACATTTCAGCAGCTACCAGATATGCAGCTTTGG
species | Oryza sativa |
transcript | LOC_Os01g71770.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCATGTTCTCGGAAACCGAACTCTAGAAGTGAAGATAGCCACTCCTAAG GAAGAAATGAAATCACAGGGATCAAAAAAGGCTACTAGAATATTTGTTGCTEST: gi|163926523|gb|EG712387.1|EG712387
genomic: AGCATGTTCTCGGAAACCGAACTCTAGAAGTGAAGATAGCCACTCCTAAGgtaaataaaa ... cattgaatagGAAGAAATGAAATCACAGGGATCAAAAAAGGCTACTAGAATATTTGTTGCT
EST: TGTTGACCGCGCCACTCCTAAG GATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTATEST: gi|58598133|gb|CK008661.1|CK008661
genomic: TGTTGACCGCGCCACTCCTAAGgtacctttgc ... tctgaaccagGATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTAT
EST: GCCACTCCTAAG GAAGAAATGAAATCACAGGCATCAAAAAAGGCTACTAGAATATTGGTTGCTEST: gi|32947891|gb|BP184463.1|BP184463
genomic: GCCACTCCTAAGgtaaataaaa ... cattgaatagGAAGAAATGAAATCACAGGGATCAAAAAAGGCTACTAGAATATTTGTTGCT
EST: CACATGAACTGGATGGCACAACAGTAGTTGTTGACCGCGCCACTCCTAAG GATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTATEST: gi|58603513|gb|CK014041.1|CK014041
genomic: CACATGAACTGGATGGCACAACAGTAGTTGTTGACCGCGCCACTCCTAAGgtacctttgc ... tctgaaccagGATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTAT
EST: CACATGAACTGGATGGCACAACAGTAGTTGTTGACCGCGCCACTCCTAAG GATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTATEST: gi|58672481|gb|CK061167.1|CK061167
genomic: CACATGAACTGGATGGCACAACAGTAGTTGTTGACCGCGCCACTCCTAAGgtacctttgc ... tctgaaccagGATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTAT
EST: CACATGAACTGGATGGCACAACAGTAGTTGTTGACCGCGCCACTCCTAAG GATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTATEST: gi|116875665|gb|EC366173.1|EC366173
genomic: CACATGAACTGGATGGCACAACAGTAGTTGTTGACCGCGCCACTCCTAAGgtacctttgc ... tctgaaccagGATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTAT
EST: AGCATGTTCTCGGAAACCGAACTCTAGAAGTGAAGATAGCCACTCCTAAG GAAGAAATGAAATCACAGGGATCAAAAAAGGCTACTAGAATATTTGTTGCTEST: gi|116875549|gb|EC366057.1|EC366057
genomic: AGCATGTTCTCGGAAACCGAACTCTAGAAGTGAAGATAGCCACTCCTAAGgtaaataaaa ... cattgaatagGAAGAAATGAAATCACAGGGATCAAAAAAGGCTACTAGAATATTTGTTGCT
EST: CACATGAACTGGATGGCACAACAGTAGTTGTTGACCGCGCCACTCCTAAG GATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTAT
genomic: CACATGAACTGGATGGCACAACAGTAGTTGTTGACCGCGCCACTCCTAAGgtacctttgc ... tctgaaccagGATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTAT
tctatttactgaagtagttatgtacttgttaccacctgaaatccatctgaaccagGATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTATGGTGCATATAATGCATACATTTCAGCAGCTACCAGATATGCAGCTTTGG
tccatct CT-rich tract
tagttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctttgctccaaagcacttgccattggtggctgcatccaatagtatcttatctttgagtaggctctgtagtaggacattctatttactgaagtagttatgtacttgttaccacctgaaatccatctgaaccagGATGAAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTATGGTGCATATAATGCATACATTTCAGCAGCTACCAGATATGCAGCTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT