1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaactcagctgcattcccagtatcgtttgatagctcatttccttttaatagattgcaactaaccattcatttactcatagCAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAATGGCTTGGACAACAATTCTTTCAGTCACATGGAGTAGTAAGGTAGCA
species | Oryza sativa |
transcript | LOC_Os01g70920.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATAC-A- -AGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACEST: gi|300216040|gb|HO088666.1|HO088666
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ttactcatagCAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGAC
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG -A--CTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACEST: gi|29656964|gb|CB653239.1|CB653239
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ttactcatagCAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGAC
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG -A--CTGTAGAGGATGATTTTTTGGACAGATGCAGTCGCTTGACAATTGACEST: gi|86537536|gb|CI177742.1|CI177742
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ttactcatagCAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGAC
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG CAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACEST: gi|88841996|gb|CI081252.1|CI081252
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ttactcatagCAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGAC
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATAC-A- -AGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACEST: gi|25806675|gb|CA762636.1|CA762636
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ttactcatagCAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGAC
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG -A--CTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACEST: gi|88842698|gb|CI081954.1|CI081954
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ttactcatagCAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGAC
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATAC-A- -AGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACEST: gi|58678984|gb|CK067671.1|CK067671
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ttactcatagCAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGAC
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG -A--CTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACEST: gi|88841982|gb|CI081238.1|CI081238
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ttactcatagCAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGAC
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATAC-A- -AGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGAC
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ttactcatagCAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGAC
tttgatagctcatttccttttaatagattgcaactaaccattcatttactcatagCAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAATGGCTTGGACAACAATTCTTTCAGTCACATGGAGTAGTAAGGTAGCA
aactaac putative branch site (score: 1)
ttcattt putative PPT
atttccttttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactcagctgcattcccagtatcgtttgatagctcatttccttttaatagattgcaactaaccattcatttactcatagCAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAATGGCTTGGACAACAATTCTTTCAGTCACATGGAGTAGTAAGGTAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA