1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...actgaacgagtgacttgtttcgctaatactatagcaacttattcttgaaaaatttcaagttagcacctgggattaactgtcatcttgagaccgtctgcagATAAACCAGATGCAGTGCCAGCTGGATTCTTATCTTCTTTGCTCGGCGCTGGATGTGAGTGCCATGGATACAATATTGAAATCGTTGGGCATTCTTTAGG
species | Oryza sativa |
transcript | LOC_Os01g67420.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCAGCTCGAGAACTGTACGCTAAGCTTGAAGGGCTGCCCATCCATCAAG ATAAACCAGATGCAGTGCCAGCTGGATTCTTATCTTCTTTGCTCGGCGCTGEST: gi|88341731|gb|CI642875.1|CI642875
genomic: ATCAGCTCGAGAACTGTACGCTAAGCTTGAAGGGCTGCCCATCCATCAAGgttagcatgg ... ccgtctgcagATAAACCAGATGCAGTGCCAGCTGGATTCTTATCTTCTTTGCTCGGCGCTG
EST: ATCAGCTCGAGAACTGTACGCTAAGCTTGAAGGGCTGCCCATCCATCAAG ATAAACCAGATGCAGTGCCAGCTGGATTCTTATCTTCTTTGCTCGGCGCTGEST: gi|88570355|gb|CI661530.1|CI661530
genomic: ATCAGCTCGAGAACTGTACGCTAAGCTTGAAGGGCTGCCCATCCATCAAGgttagcatgg ... ccgtctgcagATAAACCAGATGCAGTGCCAGCTGGATTCTTATCTTCTTTGCTCGGCGCTG
EST: ATCAGCTCGAGAACTGTACGCTAAGCTTGAAGGGCTGCCCATCCATCAAG ATAAACCAGATGCAGTGCCAGCTGGATTCTTATCTTCTTTGCTCGGCGCTG
genomic: ATCAGCTCGAGAACTGTACGCTAAGCTTGAAGGGCTGCCCATCCATCAAGgttagcatgg ... ccgtctgcagATAAACCAGATGCAGTGCCAGCTGGATTCTTATCTTCTTTGCTCGGCGCTG
tgaaaaatttcaagttagcacctgggattaactgtcatcttgagaccgtctgcagATAAACCAGATGCAGTGCCAGCTGGATTCTTATCTTCTTTGCTCGGCGCTGGATGTGAGTGCCATGGATACAATATTGAAATCGTTGGGCATTCTTTAGG
gattaac putative branch site (score: 5)
aatttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgaacgagtgacttgtttcgctaatactatagcaacttattcttgaaaaatttcaagttagcacctgggattaactgtcatcttgagaccgtctgcagATAAACCAGATGCAGTGCCAGCTGGATTCTTATCTTCTTTGCTCGGCGCTGGATGTGAGTGCCATGGATACAATATTGAAATCGTTGGGCATTCTTTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
-ctgaacg
- - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - attcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacctg