1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tactgcgatctcctttatgttattcaaaatgaaatgatatcttccatttttgcaaaaccttatgatcaaactatttgtaacatttgtttactttttgcagAAAAATGGAACACTGGTGAAAAAATTGGTGAAAGG
species | Oryza sativa |
transcript | LOC_Os01g67220.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTACCGAGTACAACAAGTGGAGAGAATAG AAAAATGGAACACCGGGTGAAAAAATTGGTGAAAGGEST: gi|88591557|gb|CI709596.1|CI709596
genomic: TTACCGAGTACAACAAGTGGAGAGAATAGgtacaattct ... ctttttgcagAAAAATGGAACA-CTGGTGAAAAAATTGGTGAAAGG
EST: GGATCCAGAAGATATTTATTTTTACCGAGTACAACAAGTGGAGAGAATAG AAAAATGGAACACTGGTGAAAAAATTGGTGAAAGGEST: gi|396941166|gb|HO188375.1|HO188375
genomic: GGATCCAGAAGATATTTATTTTTACCGAGTACAACAAGTGGAGAGAATAGgtacaattct ... ctttttgcagAAAAATGGAACACTGGTGAAAAAATTGGTGAAAGG
EST: GGATCCAGAAGATATTTATTTTTACCGAGTACAACAAGTGGAGAGAATAG AAAAATGGAACACCGGTGAAAAAATTGGTGAAAGG
genomic: GGATCCAGAAGATATTTATTTTTACCGAGTACAACAAGTGGAGAGAATAGgtacaattct ... ctttttgcagAAAAATGGAACACTGGTGAAAAAATTGGTGAAAGG
atttttgcaaaaccttatgatcaaactatttgtaacatttgtttactttttgcagAAAAATGGAACACTGGTGAAAAAATTGGTGAAAGG
ttgtaac putative branch site (score: 42)
tttgtttacttttt CT-rich tract
atttgtttacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgcgatctcctttatgttattcaaaatgaaatgatatcttccatttttgcaaaaccttatgatcaaactatttgtaacatttgtttactttttgcagAAAAATGGAACACTGGTGAAAAAATTGGTGAAAGG
tactgcg
- - - - - - - ttatgtt
- - - - - - - - - - - - - aaatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - caaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatttg