Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatcttcgatttcaggctgccaactgtttgtctactcctgtacttcataagttcatgacttgtgatattcatatatttattttatttctatattaccagTCACGCTCTATCCGGGAATTTGACCACCATGCCACTTGCATGGTTGCAAAATATGAG

Basic information

species Oryza sativa
transcript LOC_Os01g65070.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65070.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G005444_T01 (Zea mays), 3'ss of exon 9
-caatcttcgatttcaggctgccaactgtttgtctactcctgtacttcataagttcatgac-ttgtgatattcatatatttattttatttctatattaccagTCACGCTCTATCCGGGAATTTGACCACCATGCCACTTGCATGGTTGCAAAATATGAG
  |||  |    ||   |        ||||| | |      |  ||| || | |  ||||  |     | ||||| |  || || | | ||||  ||  |||||||| |||||||| || |||||||||||||| |||||  | ||  ||| |||||||
tgaattcttagattagagtaatttgttgtttctattgatgggctcttgatgactgtatgatatcacactgttcattt--ttcttctctctctaatttggcagTCACGATCTATCCGAGAGTTTGACCACCATGCTACTTGTGTTGTCTCAAGATATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88381842|gb|CI682518.1|CI682518
EST:     GCATGAACCTGTGTTGGTTCGACTTGCAAATTGGGAAGGTATTAAAAAG                         TCACGCTCTATCCGGGAATTTGACCACCATGCCACTTGCATGGTTGCAAAA
genomic: GCATGAACCTGTGTTGGTTCGACTTGCAAATTGGGAAGGTATTAAAAAGgtctgatttg ... atattaccagTCACGCTCTATCCGGGAATTTGACCACCATGCCACTTGCATGGTTGCAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcataagttcatgacttgtgatattcatatatttattttatttctatattaccagTCACGCTCTATCCGGGAATTTGACCACCATGCCACTTGCATGGTTGCAAAATATGAG
                                        tttctat  CT-rich tract
             acttgtgatattcata  TA-rich tract