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...tttacatgttttatctttatttccaactaaatattgtgtcttccagtattgtacaagcatcatttttctaacatttctctgtatttattatgatatgtagGAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTCCATGCTTGCCCTGAAAGGGCTGAAAGAACAAGGTCGGTTGGGTAGATCT
species | Oryza sativa |
transcript | LOC_Os01g64870.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTTGTACAACCGCTTGTTTTCTACTTGTGGTTTATACTATTATCTTCAG GAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTCEST: gi|29676306|gb|CB672581.1|CB672581
genomic: TCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATACTATTATCTTCAGgtaattcact ... tgatatgtagGAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTC
EST: TCTCGTACACCCGCTTGTTTTCTACTTGTGGTTTATACTATTATCTTCAG GAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTCEST: gi|29623236|gb|CB628247.1|CB628247
genomic: TCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATACTATTATCTTCAGgtaattcact ... tgatatgtagGAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTC
EST: CCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATACTATTATCTTCAG GAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTCEST: gi|29640469|gb|CB645478.1|CB645478
genomic: TCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATACTATTATCTTCAGgtaattcact ... tgatatgtagGAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTC
EST: TCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATACTATTATCTTCAG GAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTCEST: gi|29628912|gb|CB633923.1|CB633923
genomic: TCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATACTATTATCTTCAGgtaattcact ... tgatatgtagGAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTC
EST: CCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATACTATTATCTTCAG GAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTCEST: gi|29678281|gb|CB674556.1|CB674556
genomic: TCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATACTATTATCTTCAGgtaattcact ... tgatatgtagGAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTC
EST: TCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATACTATTATCTTCAG GAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTC
genomic: TCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATACTATTATCTTCAGgtaattcact ... tgatatgtagGAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTC
gtattgtacaagcatcatttttctaacatttctctgtatttattatgatatgtagGAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTCCATGCTTGCCCTGAAAGGGCTGAAAGAACAAGGTCGGTTGGGTAGATCT
ttctaac putative branch site (score: 10)
tatttattatgatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttacatgttttatctttatttccaactaaatattgtgtcttccagtattgtacaagcatcatttttctaacatttctctgtatttattatgatatgtagGAACATGCTTTCTTATGTTCTTCCATTTTCCTTGATGATGTTGGCTCTTTCCATGCTTGCCCTGAAAGGGCTGAAAGAACAAGGTCGGTTGGGTAGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -acatgtt
- - - - - - - - - - - -caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - acaagca