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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttttgtggacatcttcactgaaaaattattgaaataattttgtcttgaaaccttggtatttttagcctccctgtgttgtctggttatatttatcctttttaacacagttttcttttttcaaaatttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATGACAATGTACAGCTAACCATGGCTAGCCAGATCTACCCTGTGTCTCCTGC

Basic information

species Oryza sativa
transcript LOC_Os01g62650.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87040335|gb|CI194957.1|CI194957
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88275680|gb|CI396284.1|CI396284
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|87016447|gb|CI273657.1|CI273657
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCAGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|86853697|gb|CI330548.1|CI330548
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|58031203|gb|CX728746.1|CX728746
EST:     GAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: GAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|8334688|gb|BE039672.1|BE039672
EST:     CCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: CCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88517647|gb|CI445301.1|CI445301
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|86883135|gb|CI314315.1|CI314315
EST:     ATAT-GGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTCCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|58656359|gb|CK045039.1|CK045039
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|86429989|gb|CI082412.1|CI082412
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88384277|gb|CI551203.1|CI551203
EST:     TTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: TTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|86862926|gb|CI331740.1|CI331740
EST:     GGGAAGCACATAGTTGCCCGGGTATAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: GGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|29633935|gb|CB638944.1|CB638944
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCTTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|87016456|gb|CI273666.1|CI273666
EST:     ATATGGGAAGCACATAGTTGCCCGGTTAGAAAAACTTGTTGCAGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88845928|gb|CI084658.1|CI084658
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88842611|gb|CI081867.1|CI081867
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88488346|gb|CI425617.1|CI425617
EST:     CCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: CCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|29627677|gb|CB632688.1|CB632688
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88261580|gb|CI365156.1|CI365156
EST:     CATAGTTCCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGA-GATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: CATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|86835909|gb|CI346095.1|CI346095
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|29633937|gb|CB638946.1|CB638946
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|86834837|gb|CI345921.1|CI345921
EST:     TGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: TGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|29622762|gb|CB627773.1|CB627773
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|29645189|gb|CB650196.1|CB650196
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88845462|gb|CI084387.1|CI084387
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|86867502|gb|CI337903.1|CI337903
EST:     CGGGTAGGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: CGGGTA-GAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|86853520|gb|CI327998.1|CI327998
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|29687003|gb|CB683278.1|CB683278
EST:     GGAAGCACATAGTCCCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: GGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|29622960|gb|CB627971.1|CB627971
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88507122|gb|CI434628.1|CI434628
EST:     GGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: GGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|86837382|gb|CI347817.1|CI347817
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|86861018|gb|CI326558.1|CI326558
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTTCTCCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|58661453|gb|CK050133.1|CK050133
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88483442|gb|CI420713.1|CI420713
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCC-GTG                         AGGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAAT
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagA-GAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAAT
EST: gi|88268848|gb|CI377752.1|CI377752
EST:     TGTTGCTGCCGGTT                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCAT-AAAATG
genomic: TGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|89190571|gb|CI392424.1|CI392424
EST:     TGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGGTTCAGGCACAATATCCTTCATAATGGCAT-AAAATG
genomic: TGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|86437276|gb|CI118998.1|CI118998
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88841952|gb|CI081208.1|CI081208
EST:     ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: ATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88462961|gb|CI522072.1|CI522072
EST:     GTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: GTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88842835|gb|CI371735.1|CI371735
EST:     AAACTTGTTGCTGCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: AAACTTGTTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
EST: gi|88838009|gb|CI371587.1|CI371587
EST:     TTGCTTCCGGTG                         AGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG
genomic: TTGCTGCCGGTGgtaagctttt ... ttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggttatatttatcctttttaacacagttttcttttttcaaaatttaaatgcagAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAAAATGACAATGTACAGCTAACCATGGCTAGCCAGATCTACCCTGTGTCTCCTGC
                 ttttaac  putative branch site (score: 2)
                tttttaacacagtttt  TA-rich tract