1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgattttgggtcttatatcagttaggctttttctgtctagaaatgtgtgtgattcttgctcatcgccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAG
species | Oryza sativa |
transcript | LOC_Os01g62040.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAG ATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTEST: gi|218487371|gb|FG955211.1|FG955211
genomic: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtttgatttt ... ccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGT
EST: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAG ATTCTCGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTEST: gi|86483323|gb|CI125956.1|CI125956
genomic: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtttgatttt ... ccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGT
EST: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAG ATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTEST: gi|88829069|gb|CI073939.1|CI073939
genomic: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtttgatttt ... ccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGT
EST: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAG ATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTEST: gi|86495810|gb|CI138443.1|CI138443
genomic: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtttgatttt ... ccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGT
EST: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAG ATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGT
genomic: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtttgatttt ... ccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGT
gttaggctttttctgtctagaaatgtgtgtgattcttgctcatcgccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAG
tttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgattttgggtcttatatcagttaggctttttctgtctagaaatgtgtgtgattcttgctcatcgccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC