1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctattcttgaattattaagttttgtttgtctagttgcctcacagaagaaagaaacctacagcctaatttttttattgtttctgctgcaactctttgcagTGCCAATCGCAACTGAAGAGATTATATGCAGAAGGAATCAAAGGCTGTCATTTCGAATTCTCTGCTTACAACTTGTTGTGTGTCATGTTACACTCTAATA
species | Oryza sativa |
transcript | LOC_Os01g61930.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTCATGCGCGCTTAGCACTTCAATCTGGAGATTTACCTGAATTCAATCAG TGCCAATCGCAACTGAAGAGATTATATGCAGAAGGAATCAAAGGCTGTCATEST: gi|426262|gb|D22123.1|D22123
genomic: CTCATGCGCGCTTAGCACTTCAATCTGGAGATTTACCTGAATTCAATCAGgtttgcttat ... ctctttgcagTGCCAATCGCAACTGAAGAGATTATATGCAGAAGGAATCAAAGGCTGTCAT
EST: CTCATGCGCGCTTAGCACTTCAATCTGGAGATTTACCTGAATTCAATCAG TGCCAATCGCAACTNAAGAGATTATATGCAGAAGGGAATCAAAGGCTGTCA
genomic: CTCATGCGCGCTTAGCACTTCAATCTGGAGATTTACCTGAATTCAATCAGgtttgcttat ... ctctttgcagTGCCAATCGCAACTGAAGAGATTATATGCAGAAGG-AATCAAAGGCTGTCA
aagaaagaaacctacagcctaatttttttattgtttctgctgcaactctttgcagTGCCAATCGCAACTGAAGAGATTATATGCAGAAGGAATCAAAGGCTGTCATTTCGAATTCTCTGCTTACAACTTGTTGTGTGTCATGTTACACTCTAATA
gcctaat putative branch site (score: 14)
ctctttgc putative PPT
taatttttttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctattcttgaattattaagttttgtttgtctagttgcctcacagaagaaagaaacctacagcctaatttttttattgtttctgctgcaactctttgcagTGCCAATCGCAACTGAAGAGATTATATGCAGAAGGAATCAAAGGCTGTCATTTCGAATTCTCTGCTTACAACTTGTTGTGTGTCATGTTACACTCTAATA
- -attcttg
- - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgcaa