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...tttgtgttctttctccagtcttagaaatggtaggaatataaactttaagttaggaagtcctaatttccaaatgttgttttcacattgaacatattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCAGAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGG
species | Oryza sativa |
transcript | LOC_Os01g60660.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|86594926|gb|CI258180.1|CI258180
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|58688789|gb|CK077476.1|CK077476
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|86418870|gb|CI053671.1|CI053671
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|86492758|gb|CI135391.1|CI135391
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|86429228|gb|CI075909.1|CI075909
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|88206615|gb|CI206464.1|CI206464
genomic: TGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAGTGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|86434980|gb|CI106213.1|CI106213
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|29672822|gb|CB669097.1|CB669097
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|88959962|gb|CI381840.1|CI381840
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: CTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|86823873|gb|CI258854.1|CI258854
genomic: CTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|89198563|gb|CI016648.1|CI016648
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|29642064|gb|CB647071.1|CB647071
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|88831359|gb|CI083753.1|CI083753
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: GGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|29642108|gb|CB647115.1|CB647115
genomic: GGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTEST: gi|58694983|gb|CK083670.1|CK083670
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
EST: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTG GTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
genomic: TCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGgtatgttcta ... atattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCT
taagttaggaagtcctaatttccaaatgttgttttcacattgaacatattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCAGAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGG
tcctaat putative branch site (score: 2)
aacatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtgttctttctccagtcttagaaatggtaggaatataaactttaagttaggaagtcctaatttccaaatgttgttttcacattgaacatattgccagGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCAGAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
-ttgtgtt