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...atgatgatgcctgtcgtggggcgctacctggagccttattatgtcagttttctaaatggtttgttttgctttttaactgttcttttgaattttgtttcagGACATCGTGCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATG
species | Oryza sativa |
transcript | LOC_Os01g59850.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGACATGGCTGGGCCATCATTTCGTGGACCACTTCAACAGCAACTG GACATCGTGCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGGCAEST: gi|32947805|gb|BP184377.1|BP184377
genomic: CTGGTGACATGGCTGGGCCATCATTTCGTGGACCACTTCAACAGCAACTGgtatgtttta ... tttgtttcagGACATCGTGCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGGCA
EST: GGTGACATGGGCTGGGGCCATCATTTCGTGGACCACTTCAACAGCAACTGG GACATCGTGGCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGGEST: gi|218480196|gb|FG949563.1|FG949563
genomic: GGTGACAT-GGCT-GGGCCATCATTTCGTGGACCACTTCAACAGCAACT-Ggtatgtttta ... tttgtttcagGACATCGT-GCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGG
EST: CTGGTGACATGGCTGGGCCATCATTTCGTGGACCACTTCAACAGCAACTG GACATCGTGCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGGCAEST: gi|29669999|gb|CB666274.1|CB666274
genomic: CTGGTGACATGGCTGGGCCATCATTTCGTGGACCACTTCAACAGCAACTGgtatgtttta ... tttgtttcagGACATCGTGCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGGCA
EST: CTGGTGACATGGCTGGGCCATCATTTCGTGGACCACTTCAACAGCAACTG GACATCGTGCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGGCA
genomic: CTGGTGACATGGCTGGGCCATCATTTCGTGGACCACTTCAACAGCAACTGgtatgtttta ... tttgtttcagGACATCGTGCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGGCA
agttttctaaatggtttgttttgctttttaactgttcttttgaattttgtttcagGACATCGTGCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATG
ttttaac putative branch site (score: 26)
ttttgtttc putative PPT
ttttgaattttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatgatgcctgtcgtggggcgctacctggagccttattatgtcagttttctaaatggtttgttttgctttttaactgttcttttgaattttgtttcagGACATCGTGCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - tgatgcc
- - - - - - - - - - - - - -ctggagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttctt