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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacattgatgtcataataattctagtcaaccatagaaagtgagctatatgttgagaaaggcatgcctagaggcagattcagggaataaaagtgtgtgctaagttctttttgattatatttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGATTATTAGCATGAGGCAACAGCTTTTTGATGCTCTGAAAACGAGAG

Basic information

species Oryza sativa
transcript LOC_Os01g55540.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55540.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G094712_T04 (Zea mays), 3'ss of exon 7
gtaacattgatgtcataataattctagtcaaccatagaaagtgagctatatgttgagaaaggcatgcctagaggcagattcagggaata---aaagtgtgtgctaagttctttttgattatattt-----ttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGATTATTAGCATGAGGCAACAGCTTTTTGATGCTCTGAAAACGAGAG
                                         | |    |    |   || | |||    |||||  | | || |   ||   ||||||  | ||   |  |  |||||| |||||      | | || |  |||||||| ||||||||| |||| ||||||| ||||||||||||||| |||| |||||||||||| || ||| |||| |||||| | ||||
--------------------------------------gtatcattcttgctattgcaatgccatattcagaggtgggtccaagagttatacaaagtggttacttcctgttgattgattctatttattaacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGATCATTAACATGAGGCAACAACTATTTAATGCGCTGAAATCCAGAG

upper sequence: LOC_Os01g55540.2 (Oryza sativa), 3'ss of exon 9
lower sequence: PP1S132_95V6.1 (Physcomitrella patens), 3'ss of exon 10
gtaacattgatgtcataataattctagtcaaccatagaaagtgagctatatgttgagaaaggcatgcctagaggcagattcagggaataaaagtgtgtgctaagttctttttgattatatttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGATTATTAGCATGAGGCAACAGCTTTTTGATGCTCTGAAAACGAGAG
     ||  |     ||| ||      || |   |  ||  |||   ||||||     || |  |   | ||     |||  |    ||||||  || ||  |  |||| |||        | | |  | |   | ||| | |||||||| || ||| ||||||| ||||| ||| |||||||||||||| | |||||||| | ||| |||||| || |  |||
-----atgaacacactaacaacatagatcgatt-tgaaatatga---atatgtaacttaaagttt--ttgga-----attttg----taaaagcttgagc-gatctcttgttg-------ctgttcagGCGTC-TTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATTATTAGCATGCGTCAACAGCTCTATGACGCTCTGCAAGCTCGAG

upper sequence: LOC_Os01g55540.2 (Oryza sativa), 3'ss of exon 9
lower sequence: EFJ08853 (Selaginella moellendorffii), 3'ss of exon 9
gtaacattgatgtcataataattctagtcaaccatagaaagtgagctatatgttgagaaaggcatgcctagaggcagattcagggaataaaagtgtgtgct--aagttctttttgattatatttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGATTATTAGCATGAGGCAACAGCTTTTTGATGCTCTGAAAACGAGAG
                                                                                   |     |   | ||  ||  |||||||      | |  | ||    ||||   | ||    |||||||||||||||||||| |||||||| ||  | || ||||||||||||||  |||| |  |||||| |   | |  |||
---------------------------------------------------------------------------------gtgagccgactatatgcacttgaagttctaaggactgacttgttgcgcagTGATCTCTTTTCAGAATGGACTGTGGAGCTGAAAGGCATGGCGGACCGAATCATTAGCATGAGGCATAAGCTCTACGATGCTTTACGAGCTCGAG

upper sequence: LOC_Os01g55540.2 (Oryza sativa), 3'ss of exon 9
lower sequence: EFJ09053 (Selaginella moellendorffii), 3'ss of exon 9
gtaacattgatgtcataataattctagtcaaccatagaaagtgagctatatgttgagaaaggcatgcctagaggcagattcagggaataaaagtgtgtgct--aagttctttttgattatatttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGATTATTAGCATGAGGCAACAGCTTTTTGATGCTCTGAAAACGAGAG
                                                                                   |     |   | || |||  |||||||      | |  | ||    ||||   | ||    |||||||||||||||||||| |||||||| ||  | || ||||||||||||||  |||| |  |||||| |   | |  |||
---------------------------------------------------------------------------------gtgagccgactatatgcgcttgaagttctaaggactgacttgttgcgcagTGATCTCTTTTCAGAATGGACTGTGGAGCTGAAAGGCATGGCGGACCGAATCATTAGCATGAGGCATAAGCTCTACGATGCTTTACGAGCTCGAG

upper sequence: LOC_Os01g55540.2 (Oryza sativa), 3'ss of exon 9
lower sequence: EFJ30947 (Selaginella moellendorffii), 3'ss of exon 3
------------------------------gtaacattgatgtcataataattctagtcaaccataga-aagtgagctatatgt-----tgagaaaggcatgcctaga-------ggcagattcagggaataaaagtgt-gtgcta-agttctttttgattatatttttac-tagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGATTATTAGCATGAGGCAACAGCTTTTTGATGCTCTGAAAACGAGAG
                               |  | |||       | ||| | | || | |   | | ||    | |||  |      | ||  || |   | |  |       |   |     ||  |     | |  |  ||  || |  |   || |   || ||    ||||   | ||    |||||||||||||||||||| |||||||| ||  | || ||||||||||||||  |||| |  |||||| |   | |   ||
gtgagcgcgttagagctctcaaagtttcgactctcgttgcaactccactaaatttcgtgacctgaaaagaaacttgatatcagcctccataagtcagtcgacctttaatcgtcgcgcttgtcctgggtgacgggtgagccgcactggaggttctaaggactgacttgttgtgcagtgatctcttttcagAATGGACTGTGGAGCTGAAAGGCATGGCGGACCGAATCATTAGCATGAGGCATAAGCTCTGCGATGCTTTACGAGCTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86425177|gb|CI070274.1|CI070274
EST:     ATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: ATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|15849628|gb|BI797904.1|BI797904
EST:     TTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         T-CAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: TTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|58607107|gb|CK035140.1|CK035140
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCACCCTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|58669926|gb|CK058612.1|CK058612
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|10931117|gb|AU161391.1|AU161391
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|29639572|gb|CB644581.1|CB644581
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTCCCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86505956|gb|CI148589.1|CI148589
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|89175420|gb|CI042441.1|CI042441
EST:     TACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: TACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|33797134|gb|CF324432.1|CF324432
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|427483|gb|D23550.1|D23550
EST:     CTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|58600573|gb|CK011101.1|CK011101
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|116874986|gb|EC365494.1|EC365494
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|22307371|gb|BQ908593.1|BQ908593
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88261851|gb|CI365427.1|CI365427
EST:     CTACCATAC-TAA-GACAG                         TCCAATGTTCAATGAAT-GACTGTGGAGCTGAA-GGCATGGCTGATAGGAT
genomic: CTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88245716|gb|CI245565.1|CI245565
EST:     CTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86512169|gb|CI154802.1|CI154802
EST:     TCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: TCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|89182575|gb|CI113944.1|CI113944
EST:     CATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|24468782|gb|CA305731.1|CA305731
EST:     CTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88248072|gb|CI246690.1|CI246690
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218498466|gb|FG951779.1|FG951779
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218496561|gb|FG955449.1|FG955449
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|3760299|gb|C97555.1|C97555
EST:     ACCCTCCTATTCCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: ACCCTCCTATT-CATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|58596195|gb|CK006723.1|CK006723
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|89180993|gb|CI045076.1|CI045076
EST:     CTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86479024|gb|CI121657.1|CI121657
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86539977|gb|CI180183.1|CI180183
EST:     TGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: TGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86854770|gb|CI259056.1|CI259056
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86435549|gb|CI106782.1|CI106782
EST:     ATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: ATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|29679666|gb|CB675941.1|CB675941
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|8527496|gb|AU092311.1|AU092311
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218496988|gb|FG950831.1|FG950831
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|27577125|gb|CA999819.1|CA999819
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86261505|gb|CI017247.1|CI017247
EST:     CTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86492033|gb|CI134666.1|CI134666
EST:     ATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: ATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218495829|gb|FG948903.1|FG948903
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|89173519|gb|CI041412.1|CI041412
EST:     CTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218491933|gb|FG950038.1|FG950038
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88962646|gb|CI023746.1|CI023746
EST:     ATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: ATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|396941430|gb|HO188639.1|HO188639
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88964173|gb|CI045366.1|CI045366
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218483046|gb|FG954663.1|FG954663
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|89188022|gb|CI115271.1|CI115271
EST:     CGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|27554109|gb|CA998009.1|CA998009
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|33796812|gb|CF324273.1|CF324273
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|58612361|gb|CK040073.1|CK040073
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGACAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGATGATAGGA
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTG-CAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGA
EST: gi|89179932|gb|CI044211.1|CI044211
EST:     CCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88906202|gb|CI375274.1|CI375274
EST:     TATCCTGGCTACCA-AC-TAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: TATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|29660056|gb|CB656331.1|CB656331
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|86595031|gb|CI260270.1|CI260270
EST:     GTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: GTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|218487158|gb|FG950553.1|FG950553
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88219927|gb|CI219487.1|CI219487
EST:     TATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: TATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|29658838|gb|CB655113.1|CB655113
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|88247456|gb|CI247305.1|CI247305
EST:     CCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: CCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|58664098|gb|CK052784.1|CK052784
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|14571421|gb|BI118789.1|BI118789
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
EST: gi|2443117|gb|C74888.1|C74888
EST:     AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAG                         TGCAATGTTCA
genomic: AACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCA
EST: gi|86539650|gb|CI179856.1|CI179856
EST:     ACTTAAGGACAG                         TGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT
genomic: ACTTAAGGACAGgtaacattga ... tttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagattcagggaataaaagtgtgtgctaagttctttttgattatatttttactagTGCAATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGATTATTAGCATGAGGCAACAGCTTTTTGATGCTCTGAAAACGAGAG
                                  ttttgat  putative branch site (score: 4)
                                             tttttact  putative PPT
                          taagttctttttgatt  TA-rich tract