1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggtgcatactttagcctaaagaaacttattttaggacatttgataatgctcactaaacatttgaaaattttgttgtaaccttggtgcctttggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAACTTTTGCCATCAACTACCTCAAAGCTAGAGGTTCCATATGATACTTTAG
species | Oryza sativa |
transcript | LOC_Os01g55260.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGG ATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAAEST: gi|88847654|gb|CI018345.1|CI018345
genomic: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGGgtacattttt ... tggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAA
EST: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGG ATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAAEST: gi|86432582|gb|CI086193.1|CI086193
genomic: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGGgtacattttt ... tggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAA
EST: GCCGGCTTGAGAAACGG ATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAAEST: gi|87016598|gb|CI275600.1|CI275600
genomic: GCCGGCTTGAGAAACGGgtacattttt ... tggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAA
EST: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGG ATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAAEST: gi|3768081|gb|AU032108.1|AU032108
genomic: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGGgtacattttt ... tggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAA
EST: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGG ATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAAEST: gi|86493620|gb|CI136253.1|CI136253
genomic: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGGgtacattttt ... tggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAA
EST: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGG ATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAAEST: gi|87036076|gb|CI189523.1|CI189523
genomic: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGGgtacattttt ... tggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAA
EST: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGG ATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAAEST: gi|86499978|gb|CI142611.1|CI142611
genomic: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGGgtacattttt ... tggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAA
EST: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAAC-G ATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAAEST: gi|8858208|gb|AU095526.1|AU095526
genomic: ATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGAAACGGgtacattttt ... tggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAA
EST: TTNCCCTTGGGAACTGGACGCAGCTATGTC-CCGCCGGCTTGAGAANCGG ATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAAEST: gi|88984340|gb|CI020238.1|CI020238
genomic: TT-ACCTTGGGAACTGGACGCAGCTATG-CTCCGCCGGCTTGAGAAACGGgtacattttt ... tggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAA
EST: CAGCTATGCTCCGCCGGCTTGAGAAACGG ATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAA
genomic: CAGCTATGCTCCGCCGGCTTGAGAAACGGgtacattttt ... tggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAA
atgctcactaaacatttgaaaattttgttgtaaccttggtgcctttggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAACTTTTGCCATCAACTACCTCAAAGCTAGAGGTTCCATATGATACTTTAG
ttgtaac putative branch site (score: 9)
tgccttt putative PPT
taaacatttgaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgcatactttagcctaaagaaacttattttaggacatttgataatgctcactaaacatttgaaaattttgttgtaaccttggtgcctttggtcgtcagATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAACTTTTGCCATCAACTACCTCAAAGCTAGAGGTTCCATATGATACTTTAG
- tgcatac
- - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - -acatttg
- - - - - - - - - - - - - - - - - - - - - - - tgctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgcc