1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttttgtactaatgaaaaatcaaatacctgtgattatttctccacatatgtattttttaactctatctggaatatgcatactgatgatttttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTATTCCTGGACCGAGAATGCCGGATGGGACAAGGGGCTTTACAATGGGGCG
species | Oryza sativa |
transcript | LOC_Os01g55170.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|88663817|gb|CI486993.1|CI486993
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|88278052|gb|CI398854.1|CI398854
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: CAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|109712028|gb|CI029198.1|CI029198
genomic: CAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|218505277|gb|FG951207.1|FG951207
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAC GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACCAGCCTAEST: gi|33794161|gb|CF322971.1|CF322971
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|29673355|gb|CB669630.1|CB669630
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|86898803|gb|CI296092.1|CI296092
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGEST: gi|88977082|gb|CI024819.1|CI024819
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTG
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|29682355|gb|CB678630.1|CB678630
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|88419290|gb|CI513711.1|CI513711
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: GAGGTCAGATTCAGCGGAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGGACAAGCCTAEST: gi|29640595|gb|CB645604.1|CB645604
genomic: GAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|88478103|gb|CI415374.1|CI415374
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: CTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|88661682|gb|CI458201.1|CI458201
genomic: CTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|38480080|gb|CF964169.1|CF964169
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|88303892|gb|CI512966.1|CI512966
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: AGGTCAGATTCAGCAGAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|7378454|gb|AU088725.1|AU088725
genomic: AGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|567971|gb|D38805.1|D38805
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: --ATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|86511851|gb|CI154484.1|CI154484
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|58686024|gb|CK074711.1|CK074711
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|88662889|gb|CI474929.1|CI474929
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATGTCAAGGGAGAGTTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTAEST: gi|58687646|gb|CK076333.1|CK076333
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
EST: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG GCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
genomic: ATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGgtaaactgtt ... ttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTA
atatgtattttttaactctatctggaatatgcatactgatgatttttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTATTCCTGGACCGAGAATGCCGGATGGGACAAGGGGCTTTACAATGGGGCG
tactgat putative branch site (score: 24)
tttttcat putative PPT
tattttttaactctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgtactaatgaaaaatcaaatacctgtgattatttctccacatatgtattttttaactctatctggaatatgcatactgatgatttttcatatcagGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTATTCCTGGACCGAGAATGCCGGATGGGACAAGGGGCTTTACAATGGGGCG
- - - - - - - - aaatcaa
- - - - - - - - - - - - - cctgtga
- - - - - - - - - - - - - - - - - - - -ctccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgatt